miRNA display CGI


Results 1 - 20 of 302 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
19005 3' -60.8 NC_004684.1 + 66479 0.73 0.193669
Target:  5'- cGCCACCCGGUgGCggcuaggccuUGGCgGCGGCCUc -3'
miRNA:   3'- -CGGUGGGCCAgUG----------GCUGgUGCUGGGc -5'
19005 3' -60.8 NC_004684.1 + 51503 0.75 0.142289
Target:  5'- aCCGCCCGGUCACCG-CCGCcuggcggGACaCCu -3'
miRNA:   3'- cGGUGGGCCAGUGGCuGGUG-------CUG-GGc -5'
19005 3' -60.8 NC_004684.1 + 35692 0.75 0.142657
Target:  5'- cGCCggACCCGGUCACCaugaucgacgguGACC-UGACCUGg -3'
miRNA:   3'- -CGG--UGGGCCAGUGG------------CUGGuGCUGGGC- -5'
19005 3' -60.8 NC_004684.1 + 37652 0.75 0.142657
Target:  5'- gGCCGCCCGGUCA--GGCauCGACCCGg -3'
miRNA:   3'- -CGGUGGGCCAGUggCUGguGCUGGGC- -5'
19005 3' -60.8 NC_004684.1 + 20344 0.75 0.150211
Target:  5'- cGUCGCCCGGUgCACCGucACCGCGcaggccacCCCGa -3'
miRNA:   3'- -CGGUGGGCCA-GUGGC--UGGUGCu-------GGGC- -5'
19005 3' -60.8 NC_004684.1 + 59744 0.75 0.15294
Target:  5'- cGCCgACCCGGUCACCacgcccGCCACGGCgagcuggcucucgaCCGg -3'
miRNA:   3'- -CGG-UGGGCCAGUGGc-----UGGUGCUG--------------GGC- -5'
19005 3' -60.8 NC_004684.1 + 28791 0.74 0.170708
Target:  5'- uGCCACCCGGUU-CCGAgCugGugCuCGa -3'
miRNA:   3'- -CGGUGGGCCAGuGGCUgGugCugG-GC- -5'
19005 3' -60.8 NC_004684.1 + 25341 0.74 0.184176
Target:  5'- gGCCucCCCGGUgGCCuuGGCgGCGGCCUGa -3'
miRNA:   3'- -CGGu-GGGCCAgUGG--CUGgUGCUGGGC- -5'
19005 3' -60.8 NC_004684.1 + 58363 0.73 0.193185
Target:  5'- uGCCGCgCCGGUUGCCGccccgcacggcACCGCGcguggaggccuugGCCCGg -3'
miRNA:   3'- -CGGUG-GGCCAGUGGC-----------UGGUGC-------------UGGGC- -5'
19005 3' -60.8 NC_004684.1 + 37507 0.75 0.141555
Target:  5'- cGCCACCCGGUUACgacgaccugaugcaCGACUgcggcggcgAUGACCCGc -3'
miRNA:   3'- -CGGUGGGCCAGUG--------------GCUGG---------UGCUGGGC- -5'
19005 3' -60.8 NC_004684.1 + 41823 0.75 0.139012
Target:  5'- aCCACCCGGaggCGCUGGCCAcCGACgCGu -3'
miRNA:   3'- cGGUGGGCCa--GUGGCUGGU-GCUGgGC- -5'
19005 3' -60.8 NC_004684.1 + 11461 0.76 0.128583
Target:  5'- cGCgCACCaCGGUCACCGAggACGGCCgGg -3'
miRNA:   3'- -CG-GUGG-GCCAGUGGCUggUGCUGGgC- -5'
19005 3' -60.8 NC_004684.1 + 41359 0.78 0.088626
Target:  5'- gGCCACCCGGuUCAUCGACCGauucaucCGGgCCGa -3'
miRNA:   3'- -CGGUGGGCC-AGUGGCUGGU-------GCUgGGC- -5'
19005 3' -60.8 NC_004684.1 + 57632 0.78 0.09625
Target:  5'- aGCCACCCGGUgaccucgcguaCACCccgauugaGGCCugGACCCc -3'
miRNA:   3'- -CGGUGGGCCA-----------GUGG--------CUGGugCUGGGc -5'
19005 3' -60.8 NC_004684.1 + 18066 0.78 0.09625
Target:  5'- aCUGCCCGGU-GCCGACCACgGACUCGa -3'
miRNA:   3'- cGGUGGGCCAgUGGCUGGUG-CUGGGC- -5'
19005 3' -60.8 NC_004684.1 + 66663 0.77 0.109866
Target:  5'- gGCgGCCCGGUCACCGGCgGUG-CCCa -3'
miRNA:   3'- -CGgUGGGCCAGUGGCUGgUGCuGGGc -5'
19005 3' -60.8 NC_004684.1 + 51309 0.77 0.112798
Target:  5'- uGCCAggaacuCCCGGUCACCGGCCAucagcgccaucgUGACCgGc -3'
miRNA:   3'- -CGGU------GGGCCAGUGGCUGGU------------GCUGGgC- -5'
19005 3' -60.8 NC_004684.1 + 47051 0.77 0.115803
Target:  5'- cCCACCCGGagGCCGACaugccCGGCCCa -3'
miRNA:   3'- cGGUGGGCCagUGGCUGgu---GCUGGGc -5'
19005 3' -60.8 NC_004684.1 + 57797 0.76 0.118882
Target:  5'- gGCCaagACCUGGgaacCCGACCACGGCCUGg -3'
miRNA:   3'- -CGG---UGGGCCagu-GGCUGGUGCUGGGC- -5'
19005 3' -60.8 NC_004684.1 + 1235 0.76 0.125271
Target:  5'- gGCgGCCUGGUCGgucgcCCGGCCcCGGCCCa -3'
miRNA:   3'- -CGgUGGGCCAGU-----GGCUGGuGCUGGGc -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.