miRNA display CGI


Results 1 - 20 of 175 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
19006 5' -54.9 NC_004684.1 + 26328 0.66 0.79382
Target:  5'- gGCCGCCgauugccgacgcggUGCGcucggccauuccgucGGGCAaCGGCACCGg -3'
miRNA:   3'- aCGGCGG--------------AUGUu--------------CCUGUaGCUGUGGC- -5'
19006 5' -54.9 NC_004684.1 + 42225 0.66 0.76626
Target:  5'- gGCCGCC-----GG-UGUCGGCACCGg -3'
miRNA:   3'- aCGGCGGauguuCCuGUAGCUGUGGC- -5'
19006 5' -54.9 NC_004684.1 + 10326 0.66 0.795742
Target:  5'- cGCCGCaacGCAGGccgcCAUCGACcccGCCGg -3'
miRNA:   3'- aCGGCGga-UGUUCcu--GUAGCUG---UGGC- -5'
19006 5' -54.9 NC_004684.1 + 2496 0.66 0.776236
Target:  5'- aGCUG-CUAUGAGGGCGgccucaaCGACGCCc -3'
miRNA:   3'- aCGGCgGAUGUUCCUGUa------GCUGUGGc -5'
19006 5' -54.9 NC_004684.1 + 44319 0.66 0.795742
Target:  5'- uUGCCGCCgUugAAGG-CGUCaauGCGCuCGa -3'
miRNA:   3'- -ACGGCGG-AugUUCCuGUAGc--UGUG-GC- -5'
19006 5' -54.9 NC_004684.1 + 51516 0.66 0.777226
Target:  5'- cGCCGCCUGgcGGGACAccuucuccagguagcCGAgCACCu -3'
miRNA:   3'- aCGGCGGAUguUCCUGUa--------------GCU-GUGGc -5'
19006 5' -54.9 NC_004684.1 + 40113 0.66 0.786067
Target:  5'- gGCCGUagcggGCGcuGGcGGCcUCGGCACCGa -3'
miRNA:   3'- aCGGCGga---UGU--UC-CUGuAGCUGUGGC- -5'
19006 5' -54.9 NC_004684.1 + 31635 0.66 0.795742
Target:  5'- cGuCCGCgCUACAccauccccgccGGGACGcUGGCACUGu -3'
miRNA:   3'- aC-GGCG-GAUGU-----------UCCUGUaGCUGUGGC- -5'
19006 5' -54.9 NC_004684.1 + 19147 0.66 0.776236
Target:  5'- -cCCGCCgUGCAAGaccaacaauACGUCGACAUCGc -3'
miRNA:   3'- acGGCGG-AUGUUCc--------UGUAGCUGUGGC- -5'
19006 5' -54.9 NC_004684.1 + 26407 0.66 0.774253
Target:  5'- cGCCGCCaccggcgcgcugGCAGcGGGguUCGcCGCCGg -3'
miRNA:   3'- aCGGCGGa-----------UGUU-CCUguAGCuGUGGC- -5'
19006 5' -54.9 NC_004684.1 + 58880 0.66 0.76626
Target:  5'- aGCCGCC-ACAAucccaGCA-CGGCACCGu -3'
miRNA:   3'- aCGGCGGaUGUUcc---UGUaGCUGUGGC- -5'
19006 5' -54.9 NC_004684.1 + 63080 0.66 0.786067
Target:  5'- gUGCCGCCgUGCAAGcacuACAUuacggCGAC-CCGg -3'
miRNA:   3'- -ACGGCGG-AUGUUCc---UGUA-----GCUGuGGC- -5'
19006 5' -54.9 NC_004684.1 + 21493 0.66 0.80525
Target:  5'- cGCCgGUCaagcAUGAGGACAaggcaccggccaUCGACACCa -3'
miRNA:   3'- aCGG-CGGa---UGUUCCUGU------------AGCUGUGGc -5'
19006 5' -54.9 NC_004684.1 + 38240 0.66 0.80525
Target:  5'- cUGCUGCgCgGCGAacuGCGUCGGCACCa -3'
miRNA:   3'- -ACGGCG-GaUGUUcc-UGUAGCUGUGGc -5'
19006 5' -54.9 NC_004684.1 + 50593 0.66 0.776236
Target:  5'- aUGCCGUCgggucgGCGgucggcGGGuCAUCGGCgugGCCGa -3'
miRNA:   3'- -ACGGCGGa-----UGU------UCCuGUAGCUG---UGGC- -5'
19006 5' -54.9 NC_004684.1 + 22673 0.66 0.776236
Target:  5'- gGCCGCagaagcgcuCAAGGACAU-GGCcCCGg -3'
miRNA:   3'- aCGGCGgau------GUUCCUGUAgCUGuGGC- -5'
19006 5' -54.9 NC_004684.1 + 63460 0.66 0.76626
Target:  5'- cGCCGCCcaguuccgGCAuucgGGGGCG-CGAgGCCu -3'
miRNA:   3'- aCGGCGGa-------UGU----UCCUGUaGCUgUGGc -5'
19006 5' -54.9 NC_004684.1 + 24759 0.66 0.776236
Target:  5'- -cCUGCUgGCAGGGAagacCGGCACCGg -3'
miRNA:   3'- acGGCGGaUGUUCCUgua-GCUGUGGC- -5'
19006 5' -54.9 NC_004684.1 + 44528 0.66 0.804307
Target:  5'- gGCCGCCguggugGCccGGACGaacccggUCGGCagGCCGg -3'
miRNA:   3'- aCGGCGGa-----UGuuCCUGU-------AGCUG--UGGC- -5'
19006 5' -54.9 NC_004684.1 + 32582 0.66 0.776236
Target:  5'- gGCuCGCuCUACAAGGuguacaagaACggCGugGCCGu -3'
miRNA:   3'- aCG-GCG-GAUGUUCC---------UGuaGCugUGGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.