miRNA display CGI


Results 1 - 20 of 175 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
19006 5' -54.9 NC_004684.1 + 557 0.7 0.563424
Target:  5'- gGCCGCCaccgAgGAGGACAaggcCGAgGCCa -3'
miRNA:   3'- aCGGCGGa---UgUUCCUGUa---GCUgUGGc -5'
19006 5' -54.9 NC_004684.1 + 609 0.67 0.745913
Target:  5'- cGCaGCC-ACAAGGGCggCGAgUACCGc -3'
miRNA:   3'- aCGgCGGaUGUUCCUGuaGCU-GUGGC- -5'
19006 5' -54.9 NC_004684.1 + 707 0.66 0.776236
Target:  5'- cGCCGCCgGguGGGAagaccUgGGCACCGc -3'
miRNA:   3'- aCGGCGGaUguUCCUgu---AgCUGUGGC- -5'
19006 5' -54.9 NC_004684.1 + 746 0.81 0.134818
Target:  5'- gGCCGCCgcCGAGGcCAUCGugGCCa -3'
miRNA:   3'- aCGGCGGauGUUCCuGUAGCugUGGc -5'
19006 5' -54.9 NC_004684.1 + 902 0.67 0.703958
Target:  5'- gGCCGCCgcCAAGGcCuagcCGcCACCGg -3'
miRNA:   3'- aCGGCGGauGUUCCuGua--GCuGUGGC- -5'
19006 5' -54.9 NC_004684.1 + 995 0.69 0.617429
Target:  5'- cGCCGCCcgAgGAGGACA-CcAUGCCGg -3'
miRNA:   3'- aCGGCGGa-UgUUCCUGUaGcUGUGGC- -5'
19006 5' -54.9 NC_004684.1 + 1122 0.66 0.76626
Target:  5'- gGCCGUCcGCuGGGA---CGACGCCGc -3'
miRNA:   3'- aCGGCGGaUGuUCCUguaGCUGUGGC- -5'
19006 5' -54.9 NC_004684.1 + 1731 0.68 0.681448
Target:  5'- cGCagGCCUACucGGGACcggguagGUCGGgACCGg -3'
miRNA:   3'- aCGg-CGGAUGu-UCCUG-------UAGCUgUGGC- -5'
19006 5' -54.9 NC_004684.1 + 2281 0.68 0.65005
Target:  5'- uUGCCGCCaGCcuGGGCcaCGACGCgGu -3'
miRNA:   3'- -ACGGCGGaUGuuCCUGuaGCUGUGgC- -5'
19006 5' -54.9 NC_004684.1 + 2336 0.7 0.559148
Target:  5'- cGCCGUCUACccGGACugccgcccugaguUCGugGCCGc -3'
miRNA:   3'- aCGGCGGAUGuuCCUGu------------AGCugUGGC- -5'
19006 5' -54.9 NC_004684.1 + 2496 0.66 0.776236
Target:  5'- aGCUG-CUAUGAGGGCGgccucaaCGACGCCc -3'
miRNA:   3'- aCGGCgGAUGUUCCUGUa------GCUGUGGc -5'
19006 5' -54.9 NC_004684.1 + 2559 0.68 0.66524
Target:  5'- -cCCGCCUACcaagGAGGACAccauggcccacgaacUCGACAgCa -3'
miRNA:   3'- acGGCGGAUG----UUCCUGU---------------AGCUGUgGc -5'
19006 5' -54.9 NC_004684.1 + 2734 0.68 0.65005
Target:  5'- gUGCCGCUgcGCGccGACAUCGcgguGCGCCa -3'
miRNA:   3'- -ACGGCGGa-UGUucCUGUAGC----UGUGGc -5'
19006 5' -54.9 NC_004684.1 + 3370 0.71 0.510754
Target:  5'- aGCaCGCCUggcGCAAGGggugugaggugcACAUCGAgACCa -3'
miRNA:   3'- aCG-GCGGA---UGUUCC------------UGUAGCUgUGGc -5'
19006 5' -54.9 NC_004684.1 + 3407 0.67 0.739718
Target:  5'- cGCCGCCaaggugauggaggucUaccGCAAGGA---CGACACCGu -3'
miRNA:   3'- aCGGCGG---------------A---UGUUCCUguaGCUGUGGC- -5'
19006 5' -54.9 NC_004684.1 + 3652 0.69 0.606568
Target:  5'- gGCCGCCcggUGCcGGGuCAUCGuacgguggcccgGCACCGc -3'
miRNA:   3'- aCGGCGG---AUGuUCCuGUAGC------------UGUGGC- -5'
19006 5' -54.9 NC_004684.1 + 3802 0.68 0.688979
Target:  5'- cGCCGCCUuggcgguCAAGGAUcugcugggcgcguUCGGCguGCCGa -3'
miRNA:   3'- aCGGCGGAu------GUUCCUGu------------AGCUG--UGGC- -5'
19006 5' -54.9 NC_004684.1 + 4294 0.69 0.628303
Target:  5'- gUGCUGCC-ACAcgaguGGGACG-CGguGCACCGg -3'
miRNA:   3'- -ACGGCGGaUGU-----UCCUGUaGC--UGUGGC- -5'
19006 5' -54.9 NC_004684.1 + 4764 0.68 0.68683
Target:  5'- cGCCGCCUucgugcgcgucgccaGCAAGcGCcUCGGCGCgGu -3'
miRNA:   3'- aCGGCGGA---------------UGUUCcUGuAGCUGUGgC- -5'
19006 5' -54.9 NC_004684.1 + 4806 0.66 0.76626
Target:  5'- gGCCGaCCgcaacgGCAAGG-UGUCGAUuCCGg -3'
miRNA:   3'- aCGGC-GGa-----UGUUCCuGUAGCUGuGGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.