miRNA display CGI


Results 1 - 20 of 175 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
19006 5' -54.9 NC_004684.1 + 27541 0.7 0.574148
Target:  5'- aGCCGCCUGCu-GGAgcuaAUCGACuaggaggcCCGg -3'
miRNA:   3'- aCGGCGGAUGuuCCUg---UAGCUGu-------GGC- -5'
19006 5' -54.9 NC_004684.1 + 17840 0.71 0.510754
Target:  5'- cGCCGCUgGCAAGGugugCGuCACCGa -3'
miRNA:   3'- aCGGCGGaUGUUCCuguaGCuGUGGC- -5'
19006 5' -54.9 NC_004684.1 + 24196 0.71 0.510754
Target:  5'- aUGCCgguGCCUGCGGugcccGACAUCG-CGCCGa -3'
miRNA:   3'- -ACGG---CGGAUGUUc----CUGUAGCuGUGGC- -5'
19006 5' -54.9 NC_004684.1 + 13867 0.7 0.542144
Target:  5'- cGCCGaCCUggccauucAgGAGGGUGUCGACACCa -3'
miRNA:   3'- aCGGC-GGA--------UgUUCCUGUAGCUGUGGc -5'
19006 5' -54.9 NC_004684.1 + 55850 0.7 0.542144
Target:  5'- -aCUGCgUGCAGuGcGACGUCGACGCCa -3'
miRNA:   3'- acGGCGgAUGUU-C-CUGUAGCUGUGGc -5'
19006 5' -54.9 NC_004684.1 + 18436 0.7 0.552753
Target:  5'- gGCgGCCgACGuggcucccgagcAGGACGaCGGCACCGa -3'
miRNA:   3'- aCGgCGGaUGU------------UCCUGUaGCUGUGGC- -5'
19006 5' -54.9 NC_004684.1 + 2336 0.7 0.559148
Target:  5'- cGCCGUCUACccGGACugccgcccugaguUCGugGCCGc -3'
miRNA:   3'- aCGGCGGAUGuuCCUGu------------AGCugUGGC- -5'
19006 5' -54.9 NC_004684.1 + 33525 0.7 0.563424
Target:  5'- gGCgGCUaUGCGGGGuCGUaCGGCACCGu -3'
miRNA:   3'- aCGgCGG-AUGUUCCuGUA-GCUGUGGC- -5'
19006 5' -54.9 NC_004684.1 + 38491 0.7 0.563424
Target:  5'- cGgCGUCaGCAAGGcCAcCGACGCCGa -3'
miRNA:   3'- aCgGCGGaUGUUCCuGUaGCUGUGGC- -5'
19006 5' -54.9 NC_004684.1 + 3370 0.71 0.510754
Target:  5'- aGCaCGCCUggcGCAAGGggugugaggugcACAUCGAgACCa -3'
miRNA:   3'- aCG-GCGGA---UGUUCC------------UGUAGCUgUGGc -5'
19006 5' -54.9 NC_004684.1 + 11634 0.71 0.500457
Target:  5'- gGCCGCCUGacCGucGGCAUCGGCcacGCCa -3'
miRNA:   3'- aCGGCGGAU--GUucCUGUAGCUG---UGGc -5'
19006 5' -54.9 NC_004684.1 + 40462 0.71 0.499432
Target:  5'- gGCCGCCUGCucgGGGGucUCGGCggucugcGCCGa -3'
miRNA:   3'- aCGGCGGAUGu--UCCUguAGCUG-------UGGC- -5'
19006 5' -54.9 NC_004684.1 + 55207 0.79 0.163154
Target:  5'- cGCUggauGCCUACGAGG-CGUUGGCACCGc -3'
miRNA:   3'- aCGG----CGGAUGUUCCuGUAGCUGUGGC- -5'
19006 5' -54.9 NC_004684.1 + 11502 0.75 0.311349
Target:  5'- -aUCGCCUGCuGGGACuccCGGCACCGc -3'
miRNA:   3'- acGGCGGAUGuUCCUGua-GCUGUGGC- -5'
19006 5' -54.9 NC_004684.1 + 16128 0.74 0.334769
Target:  5'- cGCCGCCaGCAucGGCAUCaACACCa -3'
miRNA:   3'- aCGGCGGaUGUucCUGUAGcUGUGGc -5'
19006 5' -54.9 NC_004684.1 + 17872 0.73 0.376599
Target:  5'- cGCCGCCUgagcGCAAgugguGGaACAUCGAgGCCa -3'
miRNA:   3'- aCGGCGGA----UGUU-----CC-UGUAGCUgUGGc -5'
19006 5' -54.9 NC_004684.1 + 14600 0.73 0.41251
Target:  5'- -aCCGCCUACcgucgucuuaGAGGAgGaUCGACACCa -3'
miRNA:   3'- acGGCGGAUG----------UUCCUgU-AGCUGUGGc -5'
19006 5' -54.9 NC_004684.1 + 53102 0.72 0.431241
Target:  5'- gGCgGCCUGCAAGGccACAUC-ACGCgGg -3'
miRNA:   3'- aCGgCGGAUGUUCC--UGUAGcUGUGgC- -5'
19006 5' -54.9 NC_004684.1 + 11592 0.71 0.480146
Target:  5'- aGcCCGCCggUGCGccuGGACGaCGGCACCGa -3'
miRNA:   3'- aC-GGCGG--AUGUu--CCUGUaGCUGUGGC- -5'
19006 5' -54.9 NC_004684.1 + 8696 0.71 0.490253
Target:  5'- aGaCCGCCUacgacgACGAGGACuccauggCGGCGCUGa -3'
miRNA:   3'- aC-GGCGGA------UGUUCCUGua-----GCUGUGGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.