miRNA display CGI


Results 1 - 20 of 175 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
19006 5' -54.9 NC_004684.1 + 48418 1.08 0.001617
Target:  5'- uUGCCGCCUACAAGGACAUCGACACCGc -3'
miRNA:   3'- -ACGGCGGAUGUUCCUGUAGCUGUGGC- -5'
19006 5' -54.9 NC_004684.1 + 746 0.81 0.134818
Target:  5'- gGCCGCCgcCGAGGcCAUCGugGCCa -3'
miRNA:   3'- aCGGCGGauGUUCCuGUAGCugUGGc -5'
19006 5' -54.9 NC_004684.1 + 12781 0.79 0.1588
Target:  5'- cUGCgGCCaACGAGGACAaCGGCACCc -3'
miRNA:   3'- -ACGgCGGaUGUUCCUGUaGCUGUGGc -5'
19006 5' -54.9 NC_004684.1 + 55207 0.79 0.163154
Target:  5'- cGCUggauGCCUACGAGG-CGUUGGCACCGc -3'
miRNA:   3'- aCGG----CGGAUGUUCCuGUAGCUGUGGC- -5'
19006 5' -54.9 NC_004684.1 + 24318 0.77 0.230181
Target:  5'- cGUCGCCUACAccgacgAGGACGUgGuCGCCGc -3'
miRNA:   3'- aCGGCGGAUGU------UCCUGUAgCuGUGGC- -5'
19006 5' -54.9 NC_004684.1 + 30610 0.76 0.268298
Target:  5'- aGCCGCCgcCGAccaGCGUCGGCACCGg -3'
miRNA:   3'- aCGGCGGauGUUcc-UGUAGCUGUGGC- -5'
19006 5' -54.9 NC_004684.1 + 5908 0.75 0.296439
Target:  5'- cGCCGCCUGCGcGGcGACAUCGACu--- -3'
miRNA:   3'- aCGGCGGAUGU-UC-CUGUAGCUGuggc -5'
19006 5' -54.9 NC_004684.1 + 6551 0.75 0.311349
Target:  5'- cGCCGCCgu---GGACAUCGACGgUGa -3'
miRNA:   3'- aCGGCGGauguuCCUGUAGCUGUgGC- -5'
19006 5' -54.9 NC_004684.1 + 11502 0.75 0.311349
Target:  5'- -aUCGCCUGCuGGGACuccCGGCACCGc -3'
miRNA:   3'- acGGCGGAUGuUCCUGua-GCUGUGGC- -5'
19006 5' -54.9 NC_004684.1 + 16128 0.74 0.334769
Target:  5'- cGCCGCCaGCAucGGCAUCaACACCa -3'
miRNA:   3'- aCGGCGGaUGUucCUGUAGcUGUGGc -5'
19006 5' -54.9 NC_004684.1 + 23699 0.74 0.351084
Target:  5'- aGCUGCCcagGCGGugucGGACcUCGACGCCGu -3'
miRNA:   3'- aCGGCGGa--UGUU----CCUGuAGCUGUGGC- -5'
19006 5' -54.9 NC_004684.1 + 35648 0.74 0.359452
Target:  5'- gGCCGaCgUACAGGGcCGUCGGCGgCGg -3'
miRNA:   3'- aCGGC-GgAUGUUCCuGUAGCUGUgGC- -5'
19006 5' -54.9 NC_004684.1 + 7505 0.73 0.376599
Target:  5'- cGCCGCCgcauCGGGGugGaccugccCGGCACCGa -3'
miRNA:   3'- aCGGCGGau--GUUCCugUa------GCUGUGGC- -5'
19006 5' -54.9 NC_004684.1 + 17872 0.73 0.376599
Target:  5'- cGCCGCCUgagcGCAAgugguGGaACAUCGAgGCCa -3'
miRNA:   3'- aCGGCGGA----UGUU-----CC-UGUAGCUgUGGc -5'
19006 5' -54.9 NC_004684.1 + 64948 0.73 0.385378
Target:  5'- gGCCGCCcagGCGGGcGAUGUCGGCcuugucGCCGg -3'
miRNA:   3'- aCGGCGGa--UGUUC-CUGUAGCUG------UGGC- -5'
19006 5' -54.9 NC_004684.1 + 47807 0.73 0.39429
Target:  5'- gGCCGCCggacuggGCAGGuGCA-CGACGCCa -3'
miRNA:   3'- aCGGCGGa------UGUUCcUGUaGCUGUGGc -5'
19006 5' -54.9 NC_004684.1 + 8340 0.73 0.403335
Target:  5'- gGCCcugGCCUuucuGCAAGGAucggcCAUCGGCAUCGa -3'
miRNA:   3'- aCGG---CGGA----UGUUCCU-----GUAGCUGUGGC- -5'
19006 5' -54.9 NC_004684.1 + 7913 0.73 0.41251
Target:  5'- gGCCGCUggccgcGCAGgugguGGACAUCGcCGCCGa -3'
miRNA:   3'- aCGGCGGa-----UGUU-----CCUGUAGCuGUGGC- -5'
19006 5' -54.9 NC_004684.1 + 14600 0.73 0.41251
Target:  5'- -aCCGCCUACcgucgucuuaGAGGAgGaUCGACACCa -3'
miRNA:   3'- acGGCGGAUG----------UUCCUgU-AGCUGUGGc -5'
19006 5' -54.9 NC_004684.1 + 53102 0.72 0.431241
Target:  5'- gGCgGCCUGCAAGGccACAUC-ACGCgGg -3'
miRNA:   3'- aCGgCGGAUGUUCC--UGUAGcUGUGgC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.