miRNA display CGI


Results 1 - 20 of 44 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
19009 5' -55.4 NC_004684.1 + 27022 0.66 0.774568
Target:  5'- -aGCcaGGCaCCGGGUGcCG-GUGGCa -3'
miRNA:   3'- caCGaaCCG-GGCCUAUuGCaCACCGg -5'
19009 5' -55.4 NC_004684.1 + 28060 0.66 0.774568
Target:  5'- gGUGgUcGGcCCCGGcg---GUGUGGCCg -3'
miRNA:   3'- -CACgAaCC-GGGCCuauugCACACCGG- -5'
19009 5' -55.4 NC_004684.1 + 5189 0.66 0.774568
Target:  5'- cUGgUUGGCCaGGAcggcAACGUGUucgccaucaucGGCCg -3'
miRNA:   3'- cACgAACCGGgCCUa---UUGCACA-----------CCGG- -5'
19009 5' -55.4 NC_004684.1 + 60205 0.66 0.773574
Target:  5'- uGUGCUgaucggcguUGGCCuCGGcguuGUAggugcacccgcagGCG-GUGGCCa -3'
miRNA:   3'- -CACGA---------ACCGG-GCC----UAU-------------UGCaCACCGG- -5'
19009 5' -55.4 NC_004684.1 + 56977 0.66 0.765568
Target:  5'- -gGCggUGGUCaGGAUGGCGUGguucugcacgcuggcGGCCu -3'
miRNA:   3'- caCGa-ACCGGgCCUAUUGCACa--------------CCGG- -5'
19009 5' -55.4 NC_004684.1 + 56701 0.66 0.764561
Target:  5'- -aGCUgGGCCCGGGggugaagcUGGCG-GUGcugauGCCg -3'
miRNA:   3'- caCGAaCCGGGCCU--------AUUGCaCAC-----CGG- -5'
19009 5' -55.4 NC_004684.1 + 31199 0.66 0.764561
Target:  5'- -cGUagagGGCCUGGAaGACGaccUGGCCg -3'
miRNA:   3'- caCGaa--CCGGGCCUaUUGCac-ACCGG- -5'
19009 5' -55.4 NC_004684.1 + 11367 0.66 0.754421
Target:  5'- -cGCgaGGUgCCGGugGUGGCGUccaucGUGGCCu -3'
miRNA:   3'- caCGaaCCG-GGCC--UAUUGCA-----CACCGG- -5'
19009 5' -55.4 NC_004684.1 + 46396 0.66 0.754421
Target:  5'- -cGC-UGGCCgGGAUGGuCGgGUccacGGCCa -3'
miRNA:   3'- caCGaACCGGgCCUAUU-GCaCA----CCGG- -5'
19009 5' -55.4 NC_004684.1 + 48710 0.66 0.748277
Target:  5'- cGUGCggcGGCCCugccagcgcuugccGGUGGCGaUGUGGCa -3'
miRNA:   3'- -CACGaa-CCGGGc-------------CUAUUGC-ACACCGg -5'
19009 5' -55.4 NC_004684.1 + 64941 0.66 0.744158
Target:  5'- gGUGagc-GCCUGGcgGGCG-GUGGCCc -3'
miRNA:   3'- -CACgaacCGGGCCuaUUGCaCACCGG- -5'
19009 5' -55.4 NC_004684.1 + 45237 0.66 0.744158
Target:  5'- gGUGCUggucaGGCCCGGcagccAGCGcUGgucgcGGCCc -3'
miRNA:   3'- -CACGAa----CCGGGCCua---UUGC-ACa----CCGG- -5'
19009 5' -55.4 NC_004684.1 + 57125 0.66 0.743126
Target:  5'- -cGCUggcagcacUGGCgCGGcugguucgccuccAUGGCGgcgGUGGCCg -3'
miRNA:   3'- caCGA--------ACCGgGCC-------------UAUUGCa--CACCGG- -5'
19009 5' -55.4 NC_004684.1 + 10938 0.66 0.733785
Target:  5'- cGUGCUccaGGCCUuugaGGAUcGugGUGgcGGCCu -3'
miRNA:   3'- -CACGAa--CCGGG----CCUA-UugCACa-CCGG- -5'
19009 5' -55.4 NC_004684.1 + 57510 0.66 0.733785
Target:  5'- gGUGCcu-GCgCCGGAUcccgaGGCG-GUGGCCc -3'
miRNA:   3'- -CACGaacCG-GGCCUA-----UUGCaCACCGG- -5'
19009 5' -55.4 NC_004684.1 + 24546 0.66 0.733785
Target:  5'- uGUGCc-GGgCCGcGAUAGCGUcccGGCCa -3'
miRNA:   3'- -CACGaaCCgGGC-CUAUUGCAca-CCGG- -5'
19009 5' -55.4 NC_004684.1 + 23681 0.66 0.723312
Target:  5'- cUGgUcGGCCCGGAccagAGCGU--GGCCu -3'
miRNA:   3'- cACgAaCCGGGCCUa---UUGCAcaCCGG- -5'
19009 5' -55.4 NC_004684.1 + 62344 0.66 0.723312
Target:  5'- -cGUggGaGCgCCGGGUGccagacGCGUgGUGGCCa -3'
miRNA:   3'- caCGaaC-CG-GGCCUAU------UGCA-CACCGG- -5'
19009 5' -55.4 NC_004684.1 + 4180 0.67 0.71275
Target:  5'- -cGgUUGcGCCCGGcgGGCGcgGUGGUUc -3'
miRNA:   3'- caCgAAC-CGGGCCuaUUGCa-CACCGG- -5'
19009 5' -55.4 NC_004684.1 + 29097 0.67 0.702111
Target:  5'- -aGCcUGGCCUGGAgc-CGUGagcUGcGCCa -3'
miRNA:   3'- caCGaACCGGGCCUauuGCAC---AC-CGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.