miRNA display CGI


Results 1 - 20 of 72 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
19010 3' -63.7 NC_004684.1 + 52280 0.66 0.388578
Target:  5'- cGUCCCGgugacggcaaggucGGCCUCCaGGgcggccACCGCGCc -3'
miRNA:   3'- cCGGGGUa-------------CCGGAGGaCC------UGGCGCGc -5'
19010 3' -63.7 NC_004684.1 + 44687 0.66 0.385238
Target:  5'- cGGCCU--UGGCCacgUCCUGcGCCGC-CGg -3'
miRNA:   3'- -CCGGGguACCGG---AGGACcUGGCGcGC- -5'
19010 3' -63.7 NC_004684.1 + 17736 0.66 0.385238
Target:  5'- gGGCCgaguccacgCCGUGGUcggugCUCCUGGAgCCGCuggGCu -3'
miRNA:   3'- -CCGG---------GGUACCG-----GAGGACCU-GGCG---CGc -5'
19010 3' -63.7 NC_004684.1 + 1254 0.66 0.385238
Target:  5'- cGGCCCCGgcccagaugcgcUGGCUgguggccauguUCC-GGuACgCGCGCGa -3'
miRNA:   3'- -CCGGGGU------------ACCGG-----------AGGaCC-UG-GCGCGC- -5'
19010 3' -63.7 NC_004684.1 + 62951 0.66 0.37697
Target:  5'- cGGCCuCCAgcUGcGCCagCaGGcCCGCGCGu -3'
miRNA:   3'- -CCGG-GGU--AC-CGGagGaCCuGGCGCGC- -5'
19010 3' -63.7 NC_004684.1 + 757 0.66 0.37697
Target:  5'- aGGCCaUCGUGGCCaCCaaGGCCGCagGCa -3'
miRNA:   3'- -CCGG-GGUACCGGaGGacCUGGCG--CGc -5'
19010 3' -63.7 NC_004684.1 + 26865 0.66 0.37697
Target:  5'- aGGUCgCCAccGCCgacaaCCUGGGCgUGCGCGu -3'
miRNA:   3'- -CCGG-GGUacCGGa----GGACCUG-GCGCGC- -5'
19010 3' -63.7 NC_004684.1 + 3489 0.66 0.37697
Target:  5'- gGGCCgcaCCGUGGCCgCCaGGACgC-CGCa -3'
miRNA:   3'- -CCGG---GGUACCGGaGGaCCUG-GcGCGc -5'
19010 3' -63.7 NC_004684.1 + 54716 0.66 0.37615
Target:  5'- uGGCCUCGUcGGCCUCCaccaGcGAgcgcagcUCGCGCa -3'
miRNA:   3'- -CCGGGGUA-CCGGAGGa---C-CU-------GGCGCGc -5'
19010 3' -63.7 NC_004684.1 + 63206 0.66 0.368824
Target:  5'- cGGCCCCAUcuucucGGCCaCCggcGGcucguuGCCGgGCGu -3'
miRNA:   3'- -CCGGGGUA------CCGGaGGa--CC------UGGCgCGC- -5'
19010 3' -63.7 NC_004684.1 + 22210 0.66 0.368824
Target:  5'- uGGCgCagGUGGCCUCCcugcgcgacGGcacCCGCGCGa -3'
miRNA:   3'- -CCGgGg-UACCGGAGGa--------CCu--GGCGCGC- -5'
19010 3' -63.7 NC_004684.1 + 4954 0.66 0.360798
Target:  5'- uGGCaggaCUAcgaGGCCUUC-GGACUGCGCa -3'
miRNA:   3'- -CCGg---GGUa--CCGGAGGaCCUGGCGCGc -5'
19010 3' -63.7 NC_004684.1 + 4473 0.66 0.360798
Target:  5'- cGGCUUCGUcaccGGCCagggCCUGGcCCGcCGUGg -3'
miRNA:   3'- -CCGGGGUA----CCGGa---GGACCuGGC-GCGC- -5'
19010 3' -63.7 NC_004684.1 + 14186 0.66 0.352896
Target:  5'- gGGCaCCC-UGGacgcaUUCCUGGccaGCgGCGCGg -3'
miRNA:   3'- -CCG-GGGuACCg----GAGGACC---UGgCGCGC- -5'
19010 3' -63.7 NC_004684.1 + 25987 0.66 0.352896
Target:  5'- aGGCaaCCCGcUGGCgCUCCUGGcggcgGCCGgGUu -3'
miRNA:   3'- -CCG--GGGU-ACCG-GAGGACC-----UGGCgCGc -5'
19010 3' -63.7 NC_004684.1 + 41137 0.66 0.352896
Target:  5'- aGGCCuuCCA-GGCCcgCCUGGAUgGC-CGa -3'
miRNA:   3'- -CCGG--GGUaCCGGa-GGACCUGgCGcGC- -5'
19010 3' -63.7 NC_004684.1 + 56910 0.66 0.345116
Target:  5'- aGGCCgCCAUcGuGuCCUCCugccUGGAgCGCGCc -3'
miRNA:   3'- -CCGG-GGUA-C-C-GGAGG----ACCUgGCGCGc -5'
19010 3' -63.7 NC_004684.1 + 17064 0.66 0.343575
Target:  5'- aGGCCgCCcgccUGGCCgggcgcaccgaCUGGGCaCGCGUGa -3'
miRNA:   3'- -CCGG-GGu---ACCGGag---------GACCUG-GCGCGC- -5'
19010 3' -63.7 NC_004684.1 + 42548 0.66 0.342807
Target:  5'- cGGCCCgGUGGCgCUaCCgcugccgcccugugUGGugucCUGCGCGa -3'
miRNA:   3'- -CCGGGgUACCG-GA-GG--------------ACCu---GGCGCGC- -5'
19010 3' -63.7 NC_004684.1 + 1925 0.67 0.337461
Target:  5'- cGGCCUgCcgGGCCUgguaCCggcgcacgGuGGCCGCGCGc -3'
miRNA:   3'- -CCGGG-GuaCCGGA----GGa-------C-CUGGCGCGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.