miRNA display CGI


Results 21 - 40 of 200 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
19011 5' -58.3 NC_004684.1 + 26705 0.66 0.593267
Target:  5'- cAGCUGAAguUCGUCGccaccuUGCUGGCCGAg -3'
miRNA:   3'- -UCGGCUUguGGCGGC------AUGGCUGGCUa -5'
19011 5' -58.3 NC_004684.1 + 35109 0.66 0.603858
Target:  5'- cGCCGAGCGCCaauGCaccucuucGCCGACCGc- -3'
miRNA:   3'- uCGGCUUGUGG---CGgca-----UGGCUGGCua -5'
19011 5' -58.3 NC_004684.1 + 61484 0.66 0.61341
Target:  5'- cAGCCGGucgugcgcgaucaGCGCCGCCGccACCcggucaGGCUGGUg -3'
miRNA:   3'- -UCGGCU-------------UGUGGCGGCa-UGG------CUGGCUA- -5'
19011 5' -58.3 NC_004684.1 + 57725 0.66 0.603858
Target:  5'- cGCCGuACACCGCgCGcuucaccGCCGcCCGGa -3'
miRNA:   3'- uCGGCuUGUGGCG-GCa------UGGCuGGCUa -5'
19011 5' -58.3 NC_004684.1 + 64939 0.66 0.582706
Target:  5'- cGCCGAGCugGCCGCCcaGgCGGgCGAUg -3'
miRNA:   3'- uCGGCUUG--UGGCGGcaUgGCUgGCUA- -5'
19011 5' -58.3 NC_004684.1 + 10367 0.66 0.625101
Target:  5'- uGCgCGAgaucgcgcGCACCGCCGggUACCaGGCCGc- -3'
miRNA:   3'- uCG-GCU--------UGUGGCGGC--AUGG-CUGGCua -5'
19011 5' -58.3 NC_004684.1 + 385 0.66 0.582706
Target:  5'- uGCCGGucaggauCACCGCCGUggcgggcaaGCUGGgCGAc -3'
miRNA:   3'- uCGGCUu------GUGGCGGCA---------UGGCUgGCUa -5'
19011 5' -58.3 NC_004684.1 + 4161 0.66 0.625101
Target:  5'- gGGCCGAcgcccggcaACgaGCCGCCGg--UGGCCGAg -3'
miRNA:   3'- -UCGGCU---------UG--UGGCGGCaugGCUGGCUa -5'
19011 5' -58.3 NC_004684.1 + 29436 0.66 0.625101
Target:  5'- cGcCCGGAC-CCGCUGgg-CGACCGGUu -3'
miRNA:   3'- uC-GGCUUGuGGCGGCaugGCUGGCUA- -5'
19011 5' -58.3 NC_004684.1 + 25933 0.66 0.635735
Target:  5'- cGCCGAACAUCGgCaaaagGUGCCcaacGCCGAg -3'
miRNA:   3'- uCGGCUUGUGGCgG-----CAUGGc---UGGCUa -5'
19011 5' -58.3 NC_004684.1 + 59816 0.66 0.582706
Target:  5'- uGCCGcGCACCaGCCGcACCagcgccacccggGGCCGGUc -3'
miRNA:   3'- uCGGCuUGUGG-CGGCaUGG------------CUGGCUA- -5'
19011 5' -58.3 NC_004684.1 + 511 0.66 0.603858
Target:  5'- cGCCGAaggucgccaccgGCGCUGaCGUGCUGGCCa-- -3'
miRNA:   3'- uCGGCU------------UGUGGCgGCAUGGCUGGcua -5'
19011 5' -58.3 NC_004684.1 + 40224 0.66 0.603858
Target:  5'- uGGCCaGGuCGCCGCCGUAgCugguGAUCGAa -3'
miRNA:   3'- -UCGG-CUuGUGGCGGCAUgG----CUGGCUa -5'
19011 5' -58.3 NC_004684.1 + 23935 0.66 0.593267
Target:  5'- cGCCGcACcugcuGCCGCCccGCCGcACCGAc -3'
miRNA:   3'- uCGGCuUG-----UGGCGGcaUGGC-UGGCUa -5'
19011 5' -58.3 NC_004684.1 + 27065 0.66 0.582706
Target:  5'- uGCCcAGCGCCgagGUCGUGCCuGCCGGg -3'
miRNA:   3'- uCGGcUUGUGG---CGGCAUGGcUGGCUa -5'
19011 5' -58.3 NC_004684.1 + 30600 0.66 0.593267
Target:  5'- uAGCUGAccgaGCCGCC--GCCGACCa-- -3'
miRNA:   3'- -UCGGCUug--UGGCGGcaUGGCUGGcua -5'
19011 5' -58.3 NC_004684.1 + 235 0.66 0.593267
Target:  5'- uGCCGuACAUCGCCGccacgaucaucgUGCaGGCCGAc -3'
miRNA:   3'- uCGGCuUGUGGCGGC------------AUGgCUGGCUa -5'
19011 5' -58.3 NC_004684.1 + 40526 0.66 0.603858
Target:  5'- cGCUccuGCGCCGCCuccugcucgcugGUGCuCGACCGGUc -3'
miRNA:   3'- uCGGcu-UGUGGCGG------------CAUG-GCUGGCUA- -5'
19011 5' -58.3 NC_004684.1 + 43908 0.66 0.614472
Target:  5'- aGGCCGGAaagcggucacCACCGCCGUcacGCUG-UCGGg -3'
miRNA:   3'- -UCGGCUU----------GUGGCGGCA---UGGCuGGCUa -5'
19011 5' -58.3 NC_004684.1 + 55527 0.66 0.635735
Target:  5'- cGCC-AGCGCCGCCacgaguucGUACCcguuGCCGAa -3'
miRNA:   3'- uCGGcUUGUGGCGG--------CAUGGc---UGGCUa -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.