miRNA display CGI


Results 1 - 20 of 165 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
19013 5' -63.7 NC_004684.1 + 57820 0.66 0.353748
Target:  5'- aCGGCCUGGUCccggcggUGCugGCCGCCGGu--- -3'
miRNA:   3'- gGUCGGGCCGG-------ACG--UGGCGGCCcuug -5'
19013 5' -63.7 NC_004684.1 + 43674 0.66 0.378754
Target:  5'- cUCAGCCCacacggcgucgaGGUCcGaCACCGCCuGGGcAGCu -3'
miRNA:   3'- -GGUCGGG------------CCGGaC-GUGGCGG-CCC-UUG- -5'
19013 5' -63.7 NC_004684.1 + 57276 0.66 0.345935
Target:  5'- aCAGCUCGGCCUgugacggcgagccGCACC-CCGGc--- -3'
miRNA:   3'- gGUCGGGCCGGA-------------CGUGGcGGCCcuug -5'
19013 5' -63.7 NC_004684.1 + 8847 0.66 0.349826
Target:  5'- aCUGGCCaugGGCCUggacgugucgccugaGCGCCuGCUGGGAc- -3'
miRNA:   3'- -GGUCGGg--CCGGA---------------CGUGG-CGGCCCUug -5'
19013 5' -63.7 NC_004684.1 + 8617 0.66 0.346711
Target:  5'- -aAGCCCGGugcaCCgGCACCGCCGa---- -3'
miRNA:   3'- ggUCGGGCC----GGaCGUGGCGGCccuug -5'
19013 5' -63.7 NC_004684.1 + 36899 0.66 0.354537
Target:  5'- aCCAGCUCggacuGGCCggugGCAUCGCCcggucgaggccgGGuGGACa -3'
miRNA:   3'- -GGUCGGG-----CCGGa---CGUGGCGG------------CC-CUUG- -5'
19013 5' -63.7 NC_004684.1 + 43616 0.66 0.378754
Target:  5'- aCAGCCCGGCCacgGUgugGCCGagcgCGGuGAGu -3'
miRNA:   3'- gGUCGGGCCGGa--CG---UGGCg---GCC-CUUg -5'
19013 5' -63.7 NC_004684.1 + 54263 0.66 0.354537
Target:  5'- aCAGCUCcucaGCCaGCGCCGCCacccggccGGGggUg -3'
miRNA:   3'- gGUCGGGc---CGGaCGUGGCGG--------CCCuuG- -5'
19013 5' -63.7 NC_004684.1 + 53784 0.66 0.354537
Target:  5'- cCCAGaCCGGC--GCGgCGCUGGGAu- -3'
miRNA:   3'- -GGUCgGGCCGgaCGUgGCGGCCCUug -5'
19013 5' -63.7 NC_004684.1 + 63495 0.66 0.362487
Target:  5'- uCCAGCUgcGCCUGCGCCaGCaGGGcGGCc -3'
miRNA:   3'- -GGUCGGgcCGGACGUGG-CGgCCC-UUG- -5'
19013 5' -63.7 NC_004684.1 + 41976 0.66 0.338246
Target:  5'- gCCAGCgcguucaugucgCgGGCCUGCGuCCaguaccagaccacGCCGaGGAACg -3'
miRNA:   3'- -GGUCG------------GgCCGGACGU-GG-------------CGGC-CCUUG- -5'
19013 5' -63.7 NC_004684.1 + 3481 0.66 0.370559
Target:  5'- gCCAcGCCgGGCC-GCACCgugGCCGccaGGACg -3'
miRNA:   3'- -GGU-CGGgCCGGaCGUGG---CGGCc--CUUG- -5'
19013 5' -63.7 NC_004684.1 + 18643 0.66 0.373823
Target:  5'- aCCucuGCCCGGugacgacgugaccauCgUGcCGCCGCUGGGcGCg -3'
miRNA:   3'- -GGu--CGGGCC---------------GgAC-GUGGCGGCCCuUG- -5'
19013 5' -63.7 NC_004684.1 + 43395 0.66 0.370559
Target:  5'- aCGGCCCGGagaaCggGuCGCCGCCGccGAACc -3'
miRNA:   3'- gGUCGGGCCg---Ga-C-GUGGCGGCc-CUUG- -5'
19013 5' -63.7 NC_004684.1 + 2522 0.66 0.370559
Target:  5'- --cGCCCGGCaCUGCGgaCGCUGcggcaccugcguGGAGCg -3'
miRNA:   3'- gguCGGGCCG-GACGUg-GCGGC------------CCUUG- -5'
19013 5' -63.7 NC_004684.1 + 48640 0.66 0.346711
Target:  5'- cCCAgGCCCagauGCgCUGCACCgcGCCGGaGAGg -3'
miRNA:   3'- -GGU-CGGGc---CG-GACGUGG--CGGCC-CUUg -5'
19013 5' -63.7 NC_004684.1 + 330 0.66 0.378754
Target:  5'- aUCAGCUCGGUgU-UACCgcGCCGGGggUu -3'
miRNA:   3'- -GGUCGGGCCGgAcGUGG--CGGCCCuuG- -5'
19013 5' -63.7 NC_004684.1 + 65663 0.66 0.378754
Target:  5'- cCCGGUCCcgaguaGGCCUGCGCCaGCa-GGcGCu -3'
miRNA:   3'- -GGUCGGG------CCGGACGUGG-CGgcCCuUG- -5'
19013 5' -63.7 NC_004684.1 + 63988 0.66 0.339009
Target:  5'- cCCGGuaCCUGGaCCaccugGCACCGCUGGGc-- -3'
miRNA:   3'- -GGUC--GGGCC-GGa----CGUGGCGGCCCuug -5'
19013 5' -63.7 NC_004684.1 + 42757 0.66 0.362487
Target:  5'- gCGGCCUGGCCggUGCGauCC-CCGGuuuGAGCg -3'
miRNA:   3'- gGUCGGGCCGG--ACGU--GGcGGCC---CUUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.