miRNA display CGI


Results 1 - 20 of 165 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
19013 5' -63.7 NC_004684.1 + 35133 0.69 0.216196
Target:  5'- gCCAGCUCGGCuCUGcCAUCGaCCuGGGcACc -3'
miRNA:   3'- -GGUCGGGCCG-GAC-GUGGC-GG-CCCuUG- -5'
19013 5' -63.7 NC_004684.1 + 36745 0.71 0.159919
Target:  5'- gCCGuCCCGGCgCUGaCGCCGCCaGGGccGCg -3'
miRNA:   3'- -GGUcGGGCCG-GAC-GUGGCGGcCCU--UG- -5'
19013 5' -63.7 NC_004684.1 + 53157 0.71 0.168282
Target:  5'- aCCgGGUCCGGCgUGaagGCCuCCGGGGACa -3'
miRNA:   3'- -GG-UCGGGCCGgACg--UGGcGGCCCUUG- -5'
19013 5' -63.7 NC_004684.1 + 47066 0.71 0.168282
Target:  5'- aCAuGCCCGGCCcauugccaggGCACCagaacggcgguGCCGGGAcGCg -3'
miRNA:   3'- gGU-CGGGCCGGa---------CGUGG-----------CGGCCCU-UG- -5'
19013 5' -63.7 NC_004684.1 + 31749 0.71 0.177035
Target:  5'- aCGGCCCuguacgucGGCCUGUAcgccaucgaccCCGagaCCGGGAACa -3'
miRNA:   3'- gGUCGGG--------CCGGACGU-----------GGC---GGCCCUUG- -5'
19013 5' -63.7 NC_004684.1 + 56237 0.7 0.186191
Target:  5'- gCGGUCa-GCCUGCGCaaCGCCGGGAu- -3'
miRNA:   3'- gGUCGGgcCGGACGUG--GCGGCCCUug -5'
19013 5' -63.7 NC_004684.1 + 65958 0.7 0.190924
Target:  5'- uCCAGCUCGGCCUGgACCuugGCCcGGcaGGCc -3'
miRNA:   3'- -GGUCGGGCCGGACgUGG---CGGcCC--UUG- -5'
19013 5' -63.7 NC_004684.1 + 45074 0.7 0.200706
Target:  5'- --cGCUCGGCUucugguUGCGCCGCCaGGAGg -3'
miRNA:   3'- gguCGGGCCGG------ACGUGGCGGcCCUUg -5'
19013 5' -63.7 NC_004684.1 + 37134 0.7 0.210922
Target:  5'- gCCAGCgCa--CUGCGCCGCCaguucuGGGAGCg -3'
miRNA:   3'- -GGUCGgGccgGACGUGGCGG------CCCUUG- -5'
19013 5' -63.7 NC_004684.1 + 20160 0.72 0.140994
Target:  5'- aCGGCCCGGCCcuugcggcguucgacGCGCaCGUCGGGGu- -3'
miRNA:   3'- gGUCGGGCCGGa--------------CGUG-GCGGCCCUug -5'
19013 5' -63.7 NC_004684.1 + 27903 0.72 0.133528
Target:  5'- -uGGCCCGGCCUGCGCgaguucCUGGGcGACa -3'
miRNA:   3'- ggUCGGGCCGGACGUGgc----GGCCC-UUG- -5'
19013 5' -63.7 NC_004684.1 + 18273 0.73 0.126429
Target:  5'- gCAcGCCCGGCCgccugcugGCACCGaCCGgcaagaaGGAGCa -3'
miRNA:   3'- gGU-CGGGCCGGa-------CGUGGC-GGC-------CCUUG- -5'
19013 5' -63.7 NC_004684.1 + 19760 0.82 0.023726
Target:  5'- aCCuGCgCGGCCUGCcggugcCCGCCGGGGGCg -3'
miRNA:   3'- -GGuCGgGCCGGACGu-----GGCGGCCCUUG- -5'
19013 5' -63.7 NC_004684.1 + 56294 0.81 0.030398
Target:  5'- aUCAGCCCGGCCcugGCG-CGCCGGGAc- -3'
miRNA:   3'- -GGUCGGGCCGGa--CGUgGCGGCCCUug -5'
19013 5' -63.7 NC_004684.1 + 2702 0.76 0.074624
Target:  5'- cCCGGCCUGGCCgGU---GCCGGGGGCa -3'
miRNA:   3'- -GGUCGGGCCGGaCGuggCGGCCCUUG- -5'
19013 5' -63.7 NC_004684.1 + 55894 0.75 0.087617
Target:  5'- aCCuGCCCgauGGCCUGuUACCGCC-GGAGCu -3'
miRNA:   3'- -GGuCGGG---CCGGAC-GUGGCGGcCCUUG- -5'
19013 5' -63.7 NC_004684.1 + 10005 0.74 0.094896
Target:  5'- gCCGGaacugCCGGaCCUGCcgcgcGCCGaCCGGGAGCg -3'
miRNA:   3'- -GGUCg----GGCC-GGACG-----UGGC-GGCCCUUG- -5'
19013 5' -63.7 NC_004684.1 + 56985 0.74 0.097447
Target:  5'- gCCAGUUCGaGCgC-GuCACCGCCGGGGACg -3'
miRNA:   3'- -GGUCGGGC-CG-GaC-GUGGCGGCCCUUG- -5'
19013 5' -63.7 NC_004684.1 + 31007 0.74 0.100063
Target:  5'- gCAGCUgGGCCUGaCGCCGaCCGGuGAGu -3'
miRNA:   3'- gGUCGGgCCGGAC-GUGGC-GGCC-CUUg -5'
19013 5' -63.7 NC_004684.1 + 26308 0.73 0.120308
Target:  5'- gCAGCUCGGCCaG-GCCGCCGGGc-- -3'
miRNA:   3'- gGUCGGGCCGGaCgUGGCGGCCCuug -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.