miRNA display CGI


Results 1 - 20 of 165 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
19013 5' -63.7 NC_004684.1 + 22921 1.1 0.000192
Target:  5'- gCCAGCCCGGCCUGCACCGCCGGGAACu -3'
miRNA:   3'- -GGUCGGGCCGGACGUGGCGGCCCUUG- -5'
19013 5' -63.7 NC_004684.1 + 22802 0.85 0.016113
Target:  5'- gCCAGCCaCGGCCUuggccacguccuGCGCCGCCGGGGc- -3'
miRNA:   3'- -GGUCGG-GCCGGA------------CGUGGCGGCCCUug -5'
19013 5' -63.7 NC_004684.1 + 21912 0.83 0.019556
Target:  5'- aUAGCCUGGCCcgGUgaccACCGCCGGGAGCa -3'
miRNA:   3'- gGUCGGGCCGGa-CG----UGGCGGCCCUUG- -5'
19013 5' -63.7 NC_004684.1 + 28158 0.83 0.021841
Target:  5'- gCGGCCCGGCCa-CACCGCCGGGGc- -3'
miRNA:   3'- gGUCGGGCCGGacGUGGCGGCCCUug -5'
19013 5' -63.7 NC_004684.1 + 19760 0.82 0.023726
Target:  5'- aCCuGCgCGGCCUGCcggugcCCGCCGGGGGCg -3'
miRNA:   3'- -GGuCGgGCCGGACGu-----GGCGGCCCUUG- -5'
19013 5' -63.7 NC_004684.1 + 56294 0.81 0.030398
Target:  5'- aUCAGCCCGGCCcugGCG-CGCCGGGAc- -3'
miRNA:   3'- -GGUCGGGCCGGa--CGUgGCGGCCCUug -5'
19013 5' -63.7 NC_004684.1 + 13073 0.78 0.049742
Target:  5'- cCCGGCCCGGCgcucgguguugcCUGcCGCCGCgucggCGGGAGCa -3'
miRNA:   3'- -GGUCGGGCCG------------GAC-GUGGCG-----GCCCUUG- -5'
19013 5' -63.7 NC_004684.1 + 57917 0.78 0.055453
Target:  5'- aCCGGC--GGCCaGCACCGCCGGGAc- -3'
miRNA:   3'- -GGUCGggCCGGaCGUGGCGGCCCUug -5'
19013 5' -63.7 NC_004684.1 + 40114 0.77 0.061797
Target:  5'- aUCGGCCCGGUCUGCGCCGCU---AACg -3'
miRNA:   3'- -GGUCGGGCCGGACGUGGCGGcccUUG- -5'
19013 5' -63.7 NC_004684.1 + 2702 0.76 0.074624
Target:  5'- cCCGGCCUGGCCgGU---GCCGGGGGCa -3'
miRNA:   3'- -GGUCGGGCCGGaCGuggCGGCCCUUG- -5'
19013 5' -63.7 NC_004684.1 + 57979 0.76 0.074624
Target:  5'- uUCAGCCCGGCCaccagccaGCACCgguccuggcguGCCGGGAc- -3'
miRNA:   3'- -GGUCGGGCCGGa-------CGUGG-----------CGGCCCUug -5'
19013 5' -63.7 NC_004684.1 + 55894 0.75 0.087617
Target:  5'- aCCuGCCCgauGGCCUGuUACCGCC-GGAGCu -3'
miRNA:   3'- -GGuCGGG---CCGGAC-GUGGCGGcCCUUG- -5'
19013 5' -63.7 NC_004684.1 + 41562 0.75 0.089983
Target:  5'- aUCAcCuuGGCCaGCACCGCCGGGGu- -3'
miRNA:   3'- -GGUcGggCCGGaCGUGGCGGCCCUug -5'
19013 5' -63.7 NC_004684.1 + 49638 0.75 0.092408
Target:  5'- gCCAGCCCgaagucGGCCaccgcgcaCACCGCCGGGuGCa -3'
miRNA:   3'- -GGUCGGG------CCGGac------GUGGCGGCCCuUG- -5'
19013 5' -63.7 NC_004684.1 + 10005 0.74 0.094896
Target:  5'- gCCGGaacugCCGGaCCUGCcgcgcGCCGaCCGGGAGCg -3'
miRNA:   3'- -GGUCg----GGCC-GGACG-----UGGC-GGCCCUUG- -5'
19013 5' -63.7 NC_004684.1 + 56985 0.74 0.097447
Target:  5'- gCCAGUUCGaGCgC-GuCACCGCCGGGGACg -3'
miRNA:   3'- -GGUCGGGC-CG-GaC-GUGGCGGCCCUUG- -5'
19013 5' -63.7 NC_004684.1 + 35546 0.74 0.098486
Target:  5'- uCCGGCCCGGCC-GCAacggucgcccgcuguCCGgCGGGAc- -3'
miRNA:   3'- -GGUCGGGCCGGaCGU---------------GGCgGCCCUug -5'
19013 5' -63.7 NC_004684.1 + 50412 0.74 0.100063
Target:  5'- gCCcGCCUGGCCgggcGCACCGaCUGGGcACg -3'
miRNA:   3'- -GGuCGGGCCGGa---CGUGGC-GGCCCuUG- -5'
19013 5' -63.7 NC_004684.1 + 31007 0.74 0.100063
Target:  5'- gCAGCUgGGCCUGaCGCCGaCCGGuGAGu -3'
miRNA:   3'- gGUCGGgCCGGAC-GUGGC-GGCC-CUUg -5'
19013 5' -63.7 NC_004684.1 + 62998 0.74 0.100063
Target:  5'- aCCGGCCagGGCCUgGC-CCGCCGuGGcAACg -3'
miRNA:   3'- -GGUCGGg-CCGGA-CGuGGCGGC-CC-UUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.