miRNA display CGI


Results 1 - 20 of 165 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
19013 5' -63.7 NC_004684.1 + 330 0.66 0.378754
Target:  5'- aUCAGCUCGGUgU-UACCgcGCCGGGggUu -3'
miRNA:   3'- -GGUCGGGCCGgAcGUGG--CGGCCCuuG- -5'
19013 5' -63.7 NC_004684.1 + 691 0.69 0.23843
Target:  5'- cUCGGCCCcgaGGUCa--GCCGCCGGuGGACg -3'
miRNA:   3'- -GGUCGGG---CCGGacgUGGCGGCC-CUUG- -5'
19013 5' -63.7 NC_004684.1 + 1201 0.67 0.323981
Target:  5'- aCCAuCUCGuGCCaGUugCGCCGGGucGCg -3'
miRNA:   3'- -GGUcGGGC-CGGaCGugGCGGCCCu-UG- -5'
19013 5' -63.7 NC_004684.1 + 1252 0.69 0.23843
Target:  5'- cCCGGcCCCGGCCcagaUGCGCUGgCUGGuGGCc -3'
miRNA:   3'- -GGUC-GGGCCGG----ACGUGGC-GGCCcUUG- -5'
19013 5' -63.7 NC_004684.1 + 1615 0.67 0.309454
Target:  5'- gCAGuUCCGGCacCUGCACCGgcgcaaCCGGGuACc -3'
miRNA:   3'- gGUC-GGGCCG--GACGUGGC------GGCCCuUG- -5'
19013 5' -63.7 NC_004684.1 + 2464 0.67 0.316655
Target:  5'- gCCAGCUCGGCgUGCcguaccACCuGaCCuGGAGCu -3'
miRNA:   3'- -GGUCGGGCCGgACG------UGG-C-GGcCCUUG- -5'
19013 5' -63.7 NC_004684.1 + 2522 0.66 0.370559
Target:  5'- --cGCCCGGCaCUGCGgaCGCUGcggcaccugcguGGAGCg -3'
miRNA:   3'- gguCGGGCCG-GACGUg-GCGGC------------CCUUG- -5'
19013 5' -63.7 NC_004684.1 + 2702 0.76 0.074624
Target:  5'- cCCGGCCUGGCCgGU---GCCGGGGGCa -3'
miRNA:   3'- -GGUCGGGCCGGaCGuggCGGCCCUUG- -5'
19013 5' -63.7 NC_004684.1 + 2788 0.67 0.323981
Target:  5'- cCCGGCaCCGGCCag----GCCGGGGAUg -3'
miRNA:   3'- -GGUCG-GGCCGGacguggCGGCCCUUG- -5'
19013 5' -63.7 NC_004684.1 + 3481 0.66 0.370559
Target:  5'- gCCAcGCCgGGCC-GCACCgugGCCGccaGGACg -3'
miRNA:   3'- -GGU-CGGgCCGGaCGUGG---CGGCc--CUUG- -5'
19013 5' -63.7 NC_004684.1 + 4175 0.67 0.302379
Target:  5'- -uGGCCCGG-UUGCGcCCGgCGGGcGCg -3'
miRNA:   3'- ggUCGGGCCgGACGU-GGCgGCCCuUG- -5'
19013 5' -63.7 NC_004684.1 + 4216 0.68 0.275328
Target:  5'- gCCAGCCaCGacugcaugcGCCUGCGCgGCgCGcaGGAGCc -3'
miRNA:   3'- -GGUCGG-GC---------CGGACGUGgCG-GC--CCUUG- -5'
19013 5' -63.7 NC_004684.1 + 5950 0.69 0.244279
Target:  5'- gCuGCCCGGCCUGCcagucGCaCGCCuGGuccucGAACa -3'
miRNA:   3'- gGuCGGGCCGGACG-----UG-GCGG-CC-----CUUG- -5'
19013 5' -63.7 NC_004684.1 + 6038 0.67 0.29543
Target:  5'- aCCGGCgCGGCCagguUGgACCGcCCGGuGGCc -3'
miRNA:   3'- -GGUCGgGCCGG----ACgUGGC-GGCCcUUG- -5'
19013 5' -63.7 NC_004684.1 + 6107 0.66 0.376283
Target:  5'- gCGGCCUaaaGGCCaccgcguccgauggUGCGCCugagccagGCCGGGAc- -3'
miRNA:   3'- gGUCGGG---CCGG--------------ACGUGG--------CGGCCCUug -5'
19013 5' -63.7 NC_004684.1 + 6746 0.66 0.354537
Target:  5'- gCUGGCCCGGa----GCCGUCGGGuGCa -3'
miRNA:   3'- -GGUCGGGCCggacgUGGCGGCCCuUG- -5'
19013 5' -63.7 NC_004684.1 + 7333 0.68 0.262544
Target:  5'- gCguGCUCGGUgUGCAacCCGCCGGuGcGCg -3'
miRNA:   3'- -GguCGGGCCGgACGU--GGCGGCC-CuUG- -5'
19013 5' -63.7 NC_004684.1 + 8617 0.66 0.346711
Target:  5'- -aAGCCCGGugcaCCgGCACCGCCGa---- -3'
miRNA:   3'- ggUCGGGCC----GGaCGUGGCGGCccuug -5'
19013 5' -63.7 NC_004684.1 + 8847 0.66 0.349826
Target:  5'- aCUGGCCaugGGCCUggacgugucgccugaGCGCCuGCUGGGAc- -3'
miRNA:   3'- -GGUCGGg--CCGGA---------------CGUGG-CGGCCCUug -5'
19013 5' -63.7 NC_004684.1 + 9969 0.68 0.250248
Target:  5'- gCGGCCUGcuCCUGCGCggCGUCGGGAu- -3'
miRNA:   3'- gGUCGGGCc-GGACGUG--GCGGCCCUug -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.