miRNA display CGI


Results 1 - 20 of 289 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
19015 3' -62.6 NC_004684.1 + 24184 0.66 0.406283
Target:  5'- cCGCCGCCCAaaauGC-CGgUGccUGCGGUg -3'
miRNA:   3'- aGCGGCGGGU----CGcGCgACuaGCGCCG- -5'
19015 3' -62.6 NC_004684.1 + 62148 0.66 0.415035
Target:  5'- cUCGCCguGCCCGGCcuuGCGCagGGcUCGCGu- -3'
miRNA:   3'- -AGCGG--CGGGUCG---CGCGa-CU-AGCGCcg -5'
19015 3' -62.6 NC_004684.1 + 66858 0.66 0.397649
Target:  5'- cUCGaCCGCCUGGCcagcacgucaGCGCcGGUggcgaccuucggCGCGGCc -3'
miRNA:   3'- -AGC-GGCGGGUCG----------CGCGaCUA------------GCGCCG- -5'
19015 3' -62.6 NC_004684.1 + 40607 0.66 0.415035
Target:  5'- -aGCaCGUCCAGCaccaCGUUGAUCaccgccgcGCGGCc -3'
miRNA:   3'- agCG-GCGGGUCGc---GCGACUAG--------CGCCG- -5'
19015 3' -62.6 NC_004684.1 + 22335 0.66 0.397649
Target:  5'- cCGCCaCCCGGUacagGCGgUGGcgGCGGCg -3'
miRNA:   3'- aGCGGcGGGUCG----CGCgACUagCGCCG- -5'
19015 3' -62.6 NC_004684.1 + 15357 0.66 0.406283
Target:  5'- uUUGUCGCCaucgcggagcGCGCGCUGGUgauCGGCu -3'
miRNA:   3'- -AGCGGCGGgu--------CGCGCGACUAgc-GCCG- -5'
19015 3' -62.6 NC_004684.1 + 3801 0.66 0.389133
Target:  5'- cCGCCGCCuUGGCGgucaaggaucUGCUGggCGCguucGGCg -3'
miRNA:   3'- aGCGGCGG-GUCGC----------GCGACuaGCG----CCG- -5'
19015 3' -62.6 NC_004684.1 + 37145 0.66 0.406283
Target:  5'- gCGCCGCCaguucugggAGCGCGCcGAgggccacgUCGCGccgaGCa -3'
miRNA:   3'- aGCGGCGGg--------UCGCGCGaCU--------AGCGC----CG- -5'
19015 3' -62.6 NC_004684.1 + 41983 0.66 0.406283
Target:  5'- uUCuaUGCCC-GCGCGgUGGcCGCuGGCg -3'
miRNA:   3'- -AGcgGCGGGuCGCGCgACUaGCG-CCG- -5'
19015 3' -62.6 NC_004684.1 + 42630 0.66 0.384081
Target:  5'- cCGCCGCCgCcG-GUGCUGGUgccgccagcgaugagCGCGGUg -3'
miRNA:   3'- aGCGGCGG-GuCgCGCGACUA---------------GCGCCG- -5'
19015 3' -62.6 NC_004684.1 + 61490 0.66 0.406283
Target:  5'- gUCGCCGCgcaggCGGCgGCGCUcGAUgCGCGccaGCa -3'
miRNA:   3'- -AGCGGCGg----GUCG-CGCGA-CUA-GCGC---CG- -5'
19015 3' -62.6 NC_004684.1 + 13792 0.66 0.406283
Target:  5'- gCGCC-UCCAGCGCGgUG-UCGCccGCa -3'
miRNA:   3'- aGCGGcGGGUCGCGCgACuAGCGc-CG- -5'
19015 3' -62.6 NC_004684.1 + 20245 0.66 0.414154
Target:  5'- gCGCCgguacuacuuccgGCCCGGCGCGU---UCcCGGCc -3'
miRNA:   3'- aGCGG-------------CGGGUCGCGCGacuAGcGCCG- -5'
19015 3' -62.6 NC_004684.1 + 42225 0.66 0.397649
Target:  5'- -gGCCGCCggugucggcacCGGCGCGaaGA-CGUGGUg -3'
miRNA:   3'- agCGGCGG-----------GUCGCGCgaCUaGCGCCG- -5'
19015 3' -62.6 NC_004684.1 + 41157 0.66 0.397649
Target:  5'- aCGCCGCgCCGGaccCGCGCg---CGgGGUg -3'
miRNA:   3'- aGCGGCG-GGUC---GCGCGacuaGCgCCG- -5'
19015 3' -62.6 NC_004684.1 + 63565 0.66 0.380737
Target:  5'- cCGCUGCCaucagguccauCGGCcuGCGCgg--CGCGGCg -3'
miRNA:   3'- aGCGGCGG-----------GUCG--CGCGacuaGCGCCG- -5'
19015 3' -62.6 NC_004684.1 + 55043 0.66 0.380737
Target:  5'- gCGCaguguGCCCAGCGCGgUGAUCaaGa- -3'
miRNA:   3'- aGCGg----CGGGUCGCGCgACUAGcgCcg -5'
19015 3' -62.6 NC_004684.1 + 46704 0.66 0.412397
Target:  5'- -gGCgCGCCCugugcgAGCGCGCcaccgacauuacguUGAg-GCGGCg -3'
miRNA:   3'- agCG-GCGGG------UCGCGCG--------------ACUagCGCCG- -5'
19015 3' -62.6 NC_004684.1 + 58245 0.66 0.380737
Target:  5'- gUUGCCGCaCCuGcCGCGCcGAg-GCGGUc -3'
miRNA:   3'- -AGCGGCG-GGuC-GCGCGaCUagCGCCG- -5'
19015 3' -62.6 NC_004684.1 + 31456 0.66 0.427479
Target:  5'- -aGCCGCCCguagagcagguccucGGCGCGagccucuUUGCGGUc -3'
miRNA:   3'- agCGGCGGG---------------UCGCGCgacu---AGCGCCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.