miRNA display CGI


Results 1 - 20 of 289 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
19015 3' -62.6 NC_004684.1 + 26551 0.72 0.155935
Target:  5'- -gGCCGggguguacgcguUCCGGCGCGCccugGcgCGCGGCg -3'
miRNA:   3'- agCGGC------------GGGUCGCGCGa---CuaGCGCCG- -5'
19015 3' -62.6 NC_004684.1 + 27091 0.74 0.125651
Target:  5'- aUCGCCGCCCAGaucgguaccgacuuUGCGCUGGcCGuuGCc -3'
miRNA:   3'- -AGCGGCGGGUC--------------GCGCGACUaGCgcCG- -5'
19015 3' -62.6 NC_004684.1 + 22121 0.74 0.126644
Target:  5'- gCGCCuggcaGCUCAGCGCGUccagCGCGGCa -3'
miRNA:   3'- aGCGG-----CGGGUCGCGCGacuaGCGCCG- -5'
19015 3' -62.6 NC_004684.1 + 16258 0.74 0.126644
Target:  5'- gUCGCuCGCCCGGUguucGCGCcGGgcccgaCGCGGCg -3'
miRNA:   3'- -AGCG-GCGGGUCG----CGCGaCUa-----GCGCCG- -5'
19015 3' -62.6 NC_004684.1 + 6047 0.74 0.126977
Target:  5'- cUCGCgGCCCAGCugaccaaccacgccGCGCUGGUagccgaugccggggGCGGCc -3'
miRNA:   3'- -AGCGgCGGGUCG--------------CGCGACUAg-------------CGCCG- -5'
19015 3' -62.6 NC_004684.1 + 1248 0.73 0.13345
Target:  5'- gUCGCCcggccccgGCCCAGaUGCGCUGGcUgGUGGCc -3'
miRNA:   3'- -AGCGG--------CGGGUC-GCGCGACU-AgCGCCG- -5'
19015 3' -62.6 NC_004684.1 + 59110 0.73 0.13345
Target:  5'- aUGCCGUggUAGCGcCGCaGGUCGCGGCg -3'
miRNA:   3'- aGCGGCGg-GUCGC-GCGaCUAGCGCCG- -5'
19015 3' -62.6 NC_004684.1 + 58515 0.73 0.148083
Target:  5'- cUGCgGUCCAGCGUGCcGuUgGCGGCg -3'
miRNA:   3'- aGCGgCGGGUCGCGCGaCuAgCGCCG- -5'
19015 3' -62.6 NC_004684.1 + 62937 0.72 0.154335
Target:  5'- -aGCCGaCCAGCGCGCggcgcgcgccgacGAUgGUGGCg -3'
miRNA:   3'- agCGGCgGGUCGCGCGa------------CUAgCGCCG- -5'
19015 3' -62.6 NC_004684.1 + 25011 0.74 0.119844
Target:  5'- gUCG-CGCUCAGCGCcggugcaGCUGGagGCGGCa -3'
miRNA:   3'- -AGCgGCGGGUCGCG-------CGACUagCGCCG- -5'
19015 3' -62.6 NC_004684.1 + 18873 0.74 0.118276
Target:  5'- -gGCCGCacucagggcaCCAGCGCgGCUccuccacgucggcggGGUCGCGGCg -3'
miRNA:   3'- agCGGCG----------GGUCGCG-CGA---------------CUAGCGCCG- -5'
19015 3' -62.6 NC_004684.1 + 13258 0.75 0.10811
Target:  5'- -gGCCGUgaccgCCAGCGCGCUGGUgGCcGCc -3'
miRNA:   3'- agCGGCG-----GGUCGCGCGACUAgCGcCG- -5'
19015 3' -62.6 NC_004684.1 + 45231 0.81 0.033526
Target:  5'- gCGCUuggugcuggucagGCCCGGCagccaGCGCUGGUCGCGGCc -3'
miRNA:   3'- aGCGG-------------CGGGUCG-----CGCGACUAGCGCCG- -5'
19015 3' -62.6 NC_004684.1 + 26406 0.79 0.050778
Target:  5'- aCGCCGCcaCCGGCGCGCUGGcaGCGGg -3'
miRNA:   3'- aGCGGCG--GGUCGCGCGACUagCGCCg -5'
19015 3' -62.6 NC_004684.1 + 19331 0.78 0.064898
Target:  5'- cCGCCGCCgUGGCcgagcgggagGCGCUGAUCcaGCGGCg -3'
miRNA:   3'- aGCGGCGG-GUCG----------CGCGACUAG--CGCCG- -5'
19015 3' -62.6 NC_004684.1 + 36772 0.77 0.068517
Target:  5'- cCG-CGCCCGGUGCcgacGCUGGUCGgCGGCg -3'
miRNA:   3'- aGCgGCGGGUCGCG----CGACUAGC-GCCG- -5'
19015 3' -62.6 NC_004684.1 + 61327 0.77 0.070398
Target:  5'- cCGCCGCCCucGGCgGCGUaGGUgGCGGCc -3'
miRNA:   3'- aGCGGCGGG--UCG-CGCGaCUAgCGCCG- -5'
19015 3' -62.6 NC_004684.1 + 12070 0.77 0.072329
Target:  5'- -gGCCGCCgAGCGCgacgagguGCUGGcccgCGCGGCg -3'
miRNA:   3'- agCGGCGGgUCGCG--------CGACUa---GCGCCG- -5'
19015 3' -62.6 NC_004684.1 + 65432 0.76 0.085025
Target:  5'- gCGCUGCgCUGGCGUGCgGcgCGCGGCc -3'
miRNA:   3'- aGCGGCG-GGUCGCGCGaCuaGCGCCG- -5'
19015 3' -62.6 NC_004684.1 + 51558 0.76 0.08971
Target:  5'- gUCGCUcuGCgCCAGUGCGCgcugCGCGGCg -3'
miRNA:   3'- -AGCGG--CG-GGUCGCGCGacuaGCGCCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.