Results 1 - 20 of 289 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
19015 | 3' | -62.6 | NC_004684.1 | + | 42473 | 1.11 | 0.000179 |
Target: 5'- gUCGCCGCCCAGCGCGCUGAUCGCGGCg -3' miRNA: 3'- -AGCGGCGGGUCGCGCGACUAGCGCCG- -5' |
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19015 | 3' | -62.6 | NC_004684.1 | + | 24911 | 0.82 | 0.02848 |
Target: 5'- cCGCCGCCgcgauCAGCGCGCUGG--GCGGCg -3' miRNA: 3'- aGCGGCGG-----GUCGCGCGACUagCGCCG- -5' |
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19015 | 3' | -62.6 | NC_004684.1 | + | 45231 | 0.81 | 0.033526 |
Target: 5'- gCGCUuggugcuggucagGCCCGGCagccaGCGCUGGUCGCGGCc -3' miRNA: 3'- aGCGG-------------CGGGUCG-----CGCGACUAGCGCCG- -5' |
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19015 | 3' | -62.6 | NC_004684.1 | + | 40982 | 0.8 | 0.040772 |
Target: 5'- cCGCUG-CCAGCGCGCcGGUgGCGGCg -3' miRNA: 3'- aGCGGCgGGUCGCGCGaCUAgCGCCG- -5' |
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19015 | 3' | -62.6 | NC_004684.1 | + | 26406 | 0.79 | 0.050778 |
Target: 5'- aCGCCGCcaCCGGCGCGCUGGcaGCGGg -3' miRNA: 3'- aGCGGCG--GGUCGCGCGACUagCGCCg -5' |
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19015 | 3' | -62.6 | NC_004684.1 | + | 38056 | 0.78 | 0.059814 |
Target: 5'- cCGCCuCCCAGCGC-UUGGUCaGCGGCg -3' miRNA: 3'- aGCGGcGGGUCGCGcGACUAG-CGCCG- -5' |
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19015 | 3' | -62.6 | NC_004684.1 | + | 868 | 0.78 | 0.061465 |
Target: 5'- gUGcCCGCCgGGcCGCGCUGAagGCGGCc -3' miRNA: 3'- aGC-GGCGGgUC-GCGCGACUagCGCCG- -5' |
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19015 | 3' | -62.6 | NC_004684.1 | + | 4035 | 0.78 | 0.063159 |
Target: 5'- -gGCCGCUCGGUGCGCUGG--GCGGUc -3' miRNA: 3'- agCGGCGGGUCGCGCGACUagCGCCG- -5' |
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19015 | 3' | -62.6 | NC_004684.1 | + | 19331 | 0.78 | 0.064898 |
Target: 5'- cCGCCGCCgUGGCcgagcgggagGCGCUGAUCcaGCGGCg -3' miRNA: 3'- aGCGGCGG-GUCG----------CGCGACUAG--CGCCG- -5' |
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19015 | 3' | -62.6 | NC_004684.1 | + | 36772 | 0.77 | 0.068517 |
Target: 5'- cCG-CGCCCGGUGCcgacGCUGGUCGgCGGCg -3' miRNA: 3'- aGCgGCGGGUCGCG----CGACUAGC-GCCG- -5' |
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19015 | 3' | -62.6 | NC_004684.1 | + | 61327 | 0.77 | 0.070398 |
Target: 5'- cCGCCGCCCucGGCgGCGUaGGUgGCGGCc -3' miRNA: 3'- aGCGGCGGG--UCG-CGCGaCUAgCGCCG- -5' |
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19015 | 3' | -62.6 | NC_004684.1 | + | 12070 | 0.77 | 0.072329 |
Target: 5'- -gGCCGCCgAGCGCgacgagguGCUGGcccgCGCGGCg -3' miRNA: 3'- agCGGCGGgUCGCG--------CGACUa---GCGCCG- -5' |
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19015 | 3' | -62.6 | NC_004684.1 | + | 1613 | 0.76 | 0.080573 |
Target: 5'- -gGUCGCCguGCGCGCgcccaccgGcgCGCGGCg -3' miRNA: 3'- agCGGCGGguCGCGCGa-------CuaGCGCCG- -5' |
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19015 | 3' | -62.6 | NC_004684.1 | + | 65432 | 0.76 | 0.085025 |
Target: 5'- gCGCUGCgCUGGCGUGCgGcgCGCGGCc -3' miRNA: 3'- aGCGGCG-GGUCGCGCGaCuaGCGCCG- -5' |
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19015 | 3' | -62.6 | NC_004684.1 | + | 51558 | 0.76 | 0.08971 |
Target: 5'- gUCGCUcuGCgCCAGUGCGCgcugCGCGGCg -3' miRNA: 3'- -AGCGG--CG-GGUCGCGCGacuaGCGCCG- -5' |
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19015 | 3' | -62.6 | NC_004684.1 | + | 47284 | 0.76 | 0.08971 |
Target: 5'- cCGCCGCCCAGCGgugGCUGGaccuugucgUCGgGGUu -3' miRNA: 3'- aGCGGCGGGUCGCg--CGACU---------AGCgCCG- -5' |
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19015 | 3' | -62.6 | NC_004684.1 | + | 18991 | 0.75 | 0.099826 |
Target: 5'- uUCGCCGCCacaccaacgcCGGgGUGCUGAUCGUgcaccacaccGGCa -3' miRNA: 3'- -AGCGGCGG----------GUCgCGCGACUAGCG----------CCG- -5' |
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19015 | 3' | -62.6 | NC_004684.1 | + | 26667 | 0.75 | 0.102519 |
Target: 5'- cCGCC-CCCGcCGCGCUGGUCGUcccGGCc -3' miRNA: 3'- aGCGGcGGGUcGCGCGACUAGCG---CCG- -5' |
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19015 | 3' | -62.6 | NC_004684.1 | + | 13258 | 0.75 | 0.10811 |
Target: 5'- -gGCCGUgaccgCCAGCGCGCUGGUgGCcGCc -3' miRNA: 3'- agCGGCG-----GGUCGCGCGACUAgCGcCG- -5' |
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19015 | 3' | -62.6 | NC_004684.1 | + | 40397 | 0.74 | 0.113986 |
Target: 5'- aUCGCCGCgCCcGcCGCGCUcgcaccggccugGAUgGCGGCg -3' miRNA: 3'- -AGCGGCG-GGuC-GCGCGA------------CUAgCGCCG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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