miRNA display CGI


Results 1 - 20 of 289 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
19015 3' -62.6 NC_004684.1 + 519 0.68 0.325439
Target:  5'- gUCGCCa-CCGGCGCugacguGCUGGccagCGCGGUc -3'
miRNA:   3'- -AGCGGcgGGUCGCG------CGACUa---GCGCCG- -5'
19015 3' -62.6 NC_004684.1 + 868 0.78 0.061465
Target:  5'- gUGcCCGCCgGGcCGCGCUGAagGCGGCc -3'
miRNA:   3'- aGC-GGCGGgUC-GCGCGACUagCGCCG- -5'
19015 3' -62.6 NC_004684.1 + 907 0.7 0.239113
Target:  5'- cCGCCaagGCCUAGC-CGCcaccgGGUgGCGGCg -3'
miRNA:   3'- aGCGG---CGGGUCGcGCGa----CUAgCGCCG- -5'
19015 3' -62.6 NC_004684.1 + 1053 0.67 0.34061
Target:  5'- -gGCgGCaCCGGuUGUGCUGGcUgGCGGCg -3'
miRNA:   3'- agCGgCG-GGUC-GCGCGACU-AgCGCCG- -5'
19015 3' -62.6 NC_004684.1 + 1139 0.7 0.239113
Target:  5'- aCGCCGCgCUgAGCaCGCUGAUCGU-GCa -3'
miRNA:   3'- aGCGGCG-GG-UCGcGCGACUAGCGcCG- -5'
19015 3' -62.6 NC_004684.1 + 1176 0.67 0.359482
Target:  5'- gUGCCgaGCCgCAG-GCGCUGGacuacuacggcaagCGCGGCg -3'
miRNA:   3'- aGCGG--CGG-GUCgCGCGACUa-------------GCGCCG- -5'
19015 3' -62.6 NC_004684.1 + 1248 0.73 0.13345
Target:  5'- gUCGCCcggccccgGCCCAGaUGCGCUGGcUgGUGGCc -3'
miRNA:   3'- -AGCGG--------CGGGUC-GCGCGACU-AgCGCCG- -5'
19015 3' -62.6 NC_004684.1 + 1613 0.76 0.080573
Target:  5'- -gGUCGCCguGCGCGCgcccaccgGcgCGCGGCg -3'
miRNA:   3'- agCGGCGGguCGCGCGa-------CuaGCGCCG- -5'
19015 3' -62.6 NC_004684.1 + 1797 0.67 0.364313
Target:  5'- aCGCCGCCguGCG-GCucaUGAccgaggccaUgGCGGCu -3'
miRNA:   3'- aGCGGCGGguCGCgCG---ACU---------AgCGCCG- -5'
19015 3' -62.6 NC_004684.1 + 1962 0.67 0.372463
Target:  5'- gCGCCGCacgCCAGCGCaGCgccugGcgCGCGaaccGCg -3'
miRNA:   3'- aGCGGCG---GGUCGCG-CGa----CuaGCGC----CG- -5'
19015 3' -62.6 NC_004684.1 + 2056 0.67 0.355491
Target:  5'- -gGCCGCCaucguGGCcugccugGCGCUGGcCGUGGUg -3'
miRNA:   3'- agCGGCGGg----UCG-------CGCGACUaGCGCCG- -5'
19015 3' -62.6 NC_004684.1 + 2391 0.72 0.168421
Target:  5'- uUCGCCggGUgCGGCGUGCacGUCGUGGCa -3'
miRNA:   3'- -AGCGG--CGgGUCGCGCGacUAGCGCCG- -5'
19015 3' -62.6 NC_004684.1 + 2734 0.72 0.155935
Target:  5'- gUGCCGCU--GCGCGCcGAcaUCGCGGUg -3'
miRNA:   3'- aGCGGCGGguCGCGCGaCU--AGCGCCG- -5'
19015 3' -62.6 NC_004684.1 + 2862 0.68 0.287691
Target:  5'- -gGCCGCCgAGC-CGCUGggCGUcaucggugccugguGGCa -3'
miRNA:   3'- agCGGCGGgUCGcGCGACuaGCG--------------CCG- -5'
19015 3' -62.6 NC_004684.1 + 2942 0.69 0.280302
Target:  5'- gUGCCGagcaccgaggccaUCGGCGCGCUGcuGUUGCGGg -3'
miRNA:   3'- aGCGGCg------------GGUCGCGCGAC--UAGCGCCg -5'
19015 3' -62.6 NC_004684.1 + 3097 0.67 0.372463
Target:  5'- aCGaCGgCCAGgGCGCacUGcgCGCGGUc -3'
miRNA:   3'- aGCgGCgGGUCgCGCG--ACuaGCGCCG- -5'
19015 3' -62.6 NC_004684.1 + 3178 0.66 0.397649
Target:  5'- aCGCCGuguCCCAG-GUGUcGAUC-CGGCa -3'
miRNA:   3'- aGCGGC---GGGUCgCGCGaCUAGcGCCG- -5'
19015 3' -62.6 NC_004684.1 + 3533 0.68 0.325439
Target:  5'- -gGCCGCCaC-GCGCGCa---CGUGGCa -3'
miRNA:   3'- agCGGCGG-GuCGCGCGacuaGCGCCG- -5'
19015 3' -62.6 NC_004684.1 + 3652 0.69 0.282971
Target:  5'- -gGCCGCCCGGUGC-CgGGUCaucguacgGUGGCc -3'
miRNA:   3'- agCGGCGGGUCGCGcGaCUAG--------CGCCG- -5'
19015 3' -62.6 NC_004684.1 + 3801 0.66 0.389133
Target:  5'- cCGCCGCCuUGGCGgucaaggaucUGCUGggCGCguucGGCg -3'
miRNA:   3'- aGCGGCGG-GUCGC----------GCGACuaGCG----CCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.