Results 1 - 20 of 50 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
19015 | 5' | -57.2 | NC_004684.1 | + | 65342 | 0.66 | 0.658315 |
Target: 5'- aGGCCACGAUGGCGgcccccagGGCcaccaGGGc -3' miRNA: 3'- aUCGGUGCUACCGCg-------CCGaacuaCCC- -5' |
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19015 | 5' | -57.2 | NC_004684.1 | + | 33482 | 0.66 | 0.625936 |
Target: 5'- cGGCUGCGGUGGaCGCGGCggc--GGc -3' miRNA: 3'- aUCGGUGCUACC-GCGCCGaacuaCCc -5' |
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19015 | 5' | -57.2 | NC_004684.1 | + | 1101 | 0.66 | 0.615142 |
Target: 5'- aGGCCGCGAcccGGCGCaacuGGCacgaGAUGGu -3' miRNA: 3'- aUCGGUGCUa--CCGCG----CCGaa--CUACCc -5' |
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19015 | 5' | -57.2 | NC_004684.1 | + | 28089 | 0.66 | 0.614063 |
Target: 5'- -cGCCGCGcgacccgcaccggGUGGUGCGGUUcgaggccuugcUGGUGGc -3' miRNA: 3'- auCGGUGC-------------UACCGCGCCGA-----------ACUACCc -5' |
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19015 | 5' | -57.2 | NC_004684.1 | + | 36000 | 0.66 | 0.636736 |
Target: 5'- uUGGCCugGuUGGCGa-GCgUGAUGGu -3' miRNA: 3'- -AUCGGugCuACCGCgcCGaACUACCc -5' |
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19015 | 5' | -57.2 | NC_004684.1 | + | 16190 | 0.66 | 0.625936 |
Target: 5'- cUGGCCACGAUGuacggccagggcGCGCGGUcc-AUGGc -3' miRNA: 3'- -AUCGGUGCUAC------------CGCGCCGaacUACCc -5' |
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19015 | 5' | -57.2 | NC_004684.1 | + | 14093 | 0.66 | 0.669074 |
Target: 5'- gGGUgACcgGGUGGUGUGGCUcagccccggugGGUGGGa -3' miRNA: 3'- aUCGgUG--CUACCGCGCCGAa----------CUACCC- -5' |
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19015 | 5' | -57.2 | NC_004684.1 | + | 54389 | 0.66 | 0.625936 |
Target: 5'- aGGCCAUGcgGGCaaguguagaccgGCGGUguuGUGGGu -3' miRNA: 3'- aUCGGUGCuaCCG------------CGCCGaacUACCC- -5' |
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19015 | 5' | -57.2 | NC_004684.1 | + | 4179 | 0.66 | 0.647532 |
Target: 5'- gAGCCGcCGGUGGC-CGaGaa-GAUGGGg -3' miRNA: 3'- aUCGGU-GCUACCGcGC-CgaaCUACCC- -5' |
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19015 | 5' | -57.2 | NC_004684.1 | + | 11842 | 0.66 | 0.669074 |
Target: 5'- gGGCCACGgcGGCcaGCGGCgcGAguucgUGGu -3' miRNA: 3'- aUCGGUGCuaCCG--CGCCGaaCU-----ACCc -5' |
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19015 | 5' | -57.2 | NC_004684.1 | + | 19723 | 0.66 | 0.658315 |
Target: 5'- cGGCCAcuCGGUGaGCGCGGCacc-UGGa -3' miRNA: 3'- aUCGGU--GCUAC-CGCGCCGaacuACCc -5' |
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19015 | 5' | -57.2 | NC_004684.1 | + | 43566 | 0.66 | 0.669074 |
Target: 5'- cGGCCAUGAUGGUGUuacucCUUaaacGGUGGGu -3' miRNA: 3'- aUCGGUGCUACCGCGcc---GAA----CUACCC- -5' |
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19015 | 5' | -57.2 | NC_004684.1 | + | 7570 | 0.66 | 0.669074 |
Target: 5'- gGGUgGCGcUGGUGCGGCU-GGUGc- -3' miRNA: 3'- aUCGgUGCuACCGCGCCGAaCUACcc -5' |
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19015 | 5' | -57.2 | NC_004684.1 | + | 47944 | 0.66 | 0.669074 |
Target: 5'- aGGCCuuGGUGGCGuCGGCacGGcUGGcGg -3' miRNA: 3'- aUCGGugCUACCGC-GCCGaaCU-ACC-C- -5' |
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19015 | 5' | -57.2 | NC_004684.1 | + | 63584 | 0.66 | 0.669074 |
Target: 5'- cGGCCuGCGc-GGCGCGGC--GGUGGu -3' miRNA: 3'- aUCGG-UGCuaCCGCGCCGaaCUACCc -5' |
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19015 | 5' | -57.2 | NC_004684.1 | + | 8890 | 0.66 | 0.647532 |
Target: 5'- cUGGaCCGCaGUcGGCGCGGCaaGAaGGGc -3' miRNA: 3'- -AUC-GGUGcUA-CCGCGCCGaaCUaCCC- -5' |
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19015 | 5' | -57.2 | NC_004684.1 | + | 65354 | 0.66 | 0.614063 |
Target: 5'- gUAGuCCACGAacagGGCGCuGGCcUGGUcaacgucGGGg -3' miRNA: 3'- -AUC-GGUGCUa---CCGCG-CCGaACUA-------CCC- -5' |
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19015 | 5' | -57.2 | NC_004684.1 | + | 56823 | 0.67 | 0.561551 |
Target: 5'- gUGGCCAuCGAccacgaccaccUGGCGCaGC-UGGUGGa -3' miRNA: 3'- -AUCGGU-GCU-----------ACCGCGcCGaACUACCc -5' |
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19015 | 5' | -57.2 | NC_004684.1 | + | 42652 | 0.67 | 0.561551 |
Target: 5'- -cGCCAgCGAUGaGCGCGGUg-GA-GGGc -3' miRNA: 3'- auCGGU-GCUAC-CGCGCCGaaCUaCCC- -5' |
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19015 | 5' | -57.2 | NC_004684.1 | + | 33875 | 0.67 | 0.561551 |
Target: 5'- cGGCCuaccagGCGGUGcGgGCGGUgccGGUGGGc -3' miRNA: 3'- aUCGG------UGCUAC-CgCGCCGaa-CUACCC- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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