miRNA display CGI


Results 1 - 20 of 50 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
19015 5' -57.2 NC_004684.1 + 1101 0.66 0.615142
Target:  5'- aGGCCGCGAcccGGCGCaacuGGCacgaGAUGGu -3'
miRNA:   3'- aUCGGUGCUa--CCGCG----CCGaa--CUACCc -5'
19015 5' -57.2 NC_004684.1 + 4179 0.66 0.647532
Target:  5'- gAGCCGcCGGUGGC-CGaGaa-GAUGGGg -3'
miRNA:   3'- aUCGGU-GCUACCGcGC-CgaaCUACCC- -5'
19015 5' -57.2 NC_004684.1 + 5393 0.67 0.561551
Target:  5'- -cGUCGCGAuUGuGCGCGGCgggUGcgGGu -3'
miRNA:   3'- auCGGUGCU-AC-CGCGCCGa--ACuaCCc -5'
19015 5' -57.2 NC_004684.1 + 5520 0.69 0.449517
Target:  5'- -cGCCcUGGUGGCGCaGC-UGGUGGa -3'
miRNA:   3'- auCGGuGCUACCGCGcCGaACUACCc -5'
19015 5' -57.2 NC_004684.1 + 7570 0.66 0.669074
Target:  5'- gGGUgGCGcUGGUGCGGCU-GGUGc- -3'
miRNA:   3'- aUCGgUGCuACCGCGCCGAaCUACcc -5'
19015 5' -57.2 NC_004684.1 + 7811 0.68 0.509311
Target:  5'- --aCCG-GGUGGUGCGGCU-GAUGGa -3'
miRNA:   3'- aucGGUgCUACCGCGCCGAaCUACCc -5'
19015 5' -57.2 NC_004684.1 + 8890 0.66 0.647532
Target:  5'- cUGGaCCGCaGUcGGCGCGGCaaGAaGGGc -3'
miRNA:   3'- -AUC-GGUGcUA-CCGCGCCGaaCUaCCC- -5'
19015 5' -57.2 NC_004684.1 + 11842 0.66 0.669074
Target:  5'- gGGCCACGgcGGCcaGCGGCgcGAguucgUGGu -3'
miRNA:   3'- aUCGGUGCuaCCG--CGCCGaaCU-----ACCc -5'
19015 5' -57.2 NC_004684.1 + 14093 0.66 0.669074
Target:  5'- gGGUgACcgGGUGGUGUGGCUcagccccggugGGUGGGa -3'
miRNA:   3'- aUCGgUG--CUACCGCGCCGAa----------CUACCC- -5'
19015 5' -57.2 NC_004684.1 + 16062 0.74 0.224923
Target:  5'- cGGUCACGAUGGCGCugauGGCcggUGAccGGGa -3'
miRNA:   3'- aUCGGUGCUACCGCG----CCGa--ACUa-CCC- -5'
19015 5' -57.2 NC_004684.1 + 16190 0.66 0.625936
Target:  5'- cUGGCCACGAUGuacggccagggcGCGCGGUcc-AUGGc -3'
miRNA:   3'- -AUCGGUGCUAC------------CGCGCCGaacUACCc -5'
19015 5' -57.2 NC_004684.1 + 16778 0.67 0.561551
Target:  5'- gAGCgGgGAccaGGUGCGGCgcgucgugUGGUGGGc -3'
miRNA:   3'- aUCGgUgCUa--CCGCGCCGa-------ACUACCC- -5'
19015 5' -57.2 NC_004684.1 + 19723 0.66 0.658315
Target:  5'- cGGCCAcuCGGUGaGCGCGGCacc-UGGa -3'
miRNA:   3'- aUCGGU--GCUAC-CGCGCCGaacuACCc -5'
19015 5' -57.2 NC_004684.1 + 22197 0.67 0.593604
Target:  5'- -uGCCGCug-GaGCGCGGCggggUGGUGGc -3'
miRNA:   3'- auCGGUGcuaC-CGCGCCGa---ACUACCc -5'
19015 5' -57.2 NC_004684.1 + 23211 0.68 0.51961
Target:  5'- aGGCCGcCGGUGGCGaCGGCggguuccUGAaaUGGc -3'
miRNA:   3'- aUCGGU-GCUACCGC-GCCGa------ACU--ACCc -5'
19015 5' -57.2 NC_004684.1 + 23768 0.7 0.402773
Target:  5'- gGGCCGUGG-GGCGCGGCgu--UGGGc -3'
miRNA:   3'- aUCGGUGCUaCCGCGCCGaacuACCC- -5'
19015 5' -57.2 NC_004684.1 + 25064 0.67 0.561551
Target:  5'- gUGGCCAgGgcGGC-CGGgUUGGUGGc -3'
miRNA:   3'- -AUCGGUgCuaCCGcGCCgAACUACCc -5'
19015 5' -57.2 NC_004684.1 + 25340 0.71 0.341948
Target:  5'- cGGCCucccCGGUGGCcuuggcgGCGGCcUGAUGGa -3'
miRNA:   3'- aUCGGu---GCUACCG-------CGCCGaACUACCc -5'
19015 5' -57.2 NC_004684.1 + 28062 0.68 0.529989
Target:  5'- cGGCCAacCGGccugGGCGCGGCaac-UGGGg -3'
miRNA:   3'- aUCGGU--GCUa---CCGCGCCGaacuACCC- -5'
19015 5' -57.2 NC_004684.1 + 28089 0.66 0.614063
Target:  5'- -cGCCGCGcgacccgcaccggGUGGUGCGGUUcgaggccuugcUGGUGGc -3'
miRNA:   3'- auCGGUGC-------------UACCGCGCCGA-----------ACUACCc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.