miRNA display CGI


Results 1 - 20 of 50 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
19015 5' -57.2 NC_004684.1 + 54389 0.66 0.625936
Target:  5'- aGGCCAUGcgGGCaaguguagaccgGCGGUguuGUGGGu -3'
miRNA:   3'- aUCGGUGCuaCCG------------CGCCGaacUACCC- -5'
19015 5' -57.2 NC_004684.1 + 33875 0.67 0.561551
Target:  5'- cGGCCuaccagGCGGUGcGgGCGGUgccGGUGGGc -3'
miRNA:   3'- aUCGG------UGCUAC-CgCGCCGaa-CUACCC- -5'
19015 5' -57.2 NC_004684.1 + 42652 0.67 0.561551
Target:  5'- -cGCCAgCGAUGaGCGCGGUg-GA-GGGc -3'
miRNA:   3'- auCGGU-GCUAC-CGCGCCGaaCUaCCC- -5'
19015 5' -57.2 NC_004684.1 + 56823 0.67 0.561551
Target:  5'- gUGGCCAuCGAccacgaccaccUGGCGCaGC-UGGUGGa -3'
miRNA:   3'- -AUCGGU-GCU-----------ACCGCGcCGaACUACCc -5'
19015 5' -57.2 NC_004684.1 + 40710 0.67 0.603284
Target:  5'- gGGCgGCGGUGGCcgggacgaccagcGCGGCg----GGGg -3'
miRNA:   3'- aUCGgUGCUACCG-------------CGCCGaacuaCCC- -5'
19015 5' -57.2 NC_004684.1 + 32757 0.67 0.604361
Target:  5'- cGGCCGaccUGGUGGCGUGaGCaUGAccGGGu -3'
miRNA:   3'- aUCGGU---GCUACCGCGC-CGaACUa-CCC- -5'
19015 5' -57.2 NC_004684.1 + 28089 0.66 0.614063
Target:  5'- -cGCCGCGcgacccgcaccggGUGGUGCGGUUcgaggccuugcUGGUGGc -3'
miRNA:   3'- auCGGUGC-------------UACCGCGCCGA-----------ACUACCc -5'
19015 5' -57.2 NC_004684.1 + 1101 0.66 0.615142
Target:  5'- aGGCCGCGAcccGGCGCaacuGGCacgaGAUGGu -3'
miRNA:   3'- aUCGGUGCUa--CCGCG----CCGaa--CUACCc -5'
19015 5' -57.2 NC_004684.1 + 33482 0.66 0.625936
Target:  5'- cGGCUGCGGUGGaCGCGGCggc--GGc -3'
miRNA:   3'- aUCGGUGCUACC-GCGCCGaacuaCCc -5'
19015 5' -57.2 NC_004684.1 + 16778 0.67 0.561551
Target:  5'- gAGCgGgGAccaGGUGCGGCgcgucgugUGGUGGGc -3'
miRNA:   3'- aUCGgUgCUa--CCGCGCCGa-------ACUACCC- -5'
19015 5' -57.2 NC_004684.1 + 62958 0.68 0.540443
Target:  5'- -cGCCgACGAUGGUgGCGuGCUcGGUGGu -3'
miRNA:   3'- auCGG-UGCUACCG-CGC-CGAaCUACCc -5'
19015 5' -57.2 NC_004684.1 + 30486 0.68 0.51961
Target:  5'- cGGCUAUGAcccgagcgUGGgGCGGCUggcGcUGGGg -3'
miRNA:   3'- aUCGGUGCU--------ACCgCGCCGAa--CuACCC- -5'
19015 5' -57.2 NC_004684.1 + 41429 0.72 0.334728
Target:  5'- -cGUgGCGGUGGUGCGGCggUGccgccggugucaGUGGGg -3'
miRNA:   3'- auCGgUGCUACCGCGCCGa-AC------------UACCC- -5'
19015 5' -57.2 NC_004684.1 + 25340 0.71 0.341948
Target:  5'- cGGCCucccCGGUGGCcuuggcgGCGGCcUGAUGGa -3'
miRNA:   3'- aUCGGu---GCUACCG-------CGCCGaACUACCc -5'
19015 5' -57.2 NC_004684.1 + 66643 0.71 0.376247
Target:  5'- gUGGCCACGAUGGCcucgGCGGCggcccGGu -3'
miRNA:   3'- -AUCGGUGCUACCG----CGCCGaacuaCCc -5'
19015 5' -57.2 NC_004684.1 + 23768 0.7 0.402773
Target:  5'- gGGCCGUGG-GGCGCGGCgu--UGGGc -3'
miRNA:   3'- aUCGGUGCUaCCGCGCCGaacuACCC- -5'
19015 5' -57.2 NC_004684.1 + 36086 0.7 0.421103
Target:  5'- gAGCCGCGAUGGgaggcaaGCGcGC--GGUGGGu -3'
miRNA:   3'- aUCGGUGCUACCg------CGC-CGaaCUACCC- -5'
19015 5' -57.2 NC_004684.1 + 46597 0.69 0.472991
Target:  5'- cGGCgGCGAcGGCgGCGGUUUGGUacgagcgcaguucgcGGGg -3'
miRNA:   3'- aUCGgUGCUaCCG-CGCCGAACUA---------------CCC- -5'
19015 5' -57.2 NC_004684.1 + 64828 0.69 0.487972
Target:  5'- gGGCCAUGGUguccuccuugguaGGCG-GGUgguugUGGUGGGg -3'
miRNA:   3'- aUCGGUGCUA-------------CCGCgCCGa----ACUACCC- -5'
19015 5' -57.2 NC_004684.1 + 23211 0.68 0.51961
Target:  5'- aGGCCGcCGGUGGCGaCGGCggguuccUGAaaUGGc -3'
miRNA:   3'- aUCGGU-GCUACCGC-GCCGa------ACU--ACCc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.