miRNA display CGI


Results 1 - 20 of 50 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
19015 5' -57.2 NC_004684.1 + 42512 1.09 0.000718
Target:  5'- gUAGCCACGAUGGCGCGGCUUGAUGGGg -3'
miRNA:   3'- -AUCGGUGCUACCGCGCCGAACUACCC- -5'
19015 5' -57.2 NC_004684.1 + 63909 0.75 0.2022
Target:  5'- cGGCCACGGUgcggcccGGCGUGGCUgagcuUGGGc -3'
miRNA:   3'- aUCGGUGCUA-------CCGCGCCGAacu--ACCC- -5'
19015 5' -57.2 NC_004684.1 + 16062 0.74 0.224923
Target:  5'- cGGUCACGAUGGCGCugauGGCcggUGAccGGGa -3'
miRNA:   3'- aUCGGUGCUACCGCG----CCGa--ACUa-CCC- -5'
19015 5' -57.2 NC_004684.1 + 31614 0.74 0.230784
Target:  5'- -cGCCACGAUGgaGCGCGGCgcgcGcUGGGu -3'
miRNA:   3'- auCGGUGCUAC--CGCGCCGaa--CuACCC- -5'
19015 5' -57.2 NC_004684.1 + 57196 0.74 0.242893
Target:  5'- gGGCCugGAaGGCgGCGGCgcGAUGGu -3'
miRNA:   3'- aUCGGugCUaCCG-CGCCGaaCUACCc -5'
19015 5' -57.2 NC_004684.1 + 37138 0.73 0.268694
Target:  5'- gUAGCCACGuGUGaGCGCcacCUUGGUGGGu -3'
miRNA:   3'- -AUCGGUGC-UAC-CGCGcc-GAACUACCC- -5'
19015 5' -57.2 NC_004684.1 + 58871 0.73 0.268694
Target:  5'- cAGCCGCGAcuucuggcguUGGCGaUGGuCUUGGUGGu -3'
miRNA:   3'- aUCGGUGCU----------ACCGC-GCC-GAACUACCc -5'
19015 5' -57.2 NC_004684.1 + 54672 0.72 0.311472
Target:  5'- cUGGuCCACGGccucUGGCGUGGCUUcugcGAUGGc -3'
miRNA:   3'- -AUC-GGUGCU----ACCGCGCCGAA----CUACCc -5'
19015 5' -57.2 NC_004684.1 + 41429 0.72 0.334728
Target:  5'- -cGUgGCGGUGGUGCGGCggUGccgccggugucaGUGGGg -3'
miRNA:   3'- auCGgUGCUACCGCGCCGa-AC------------UACCC- -5'
19015 5' -57.2 NC_004684.1 + 25340 0.71 0.341948
Target:  5'- cGGCCucccCGGUGGCcuuggcgGCGGCcUGAUGGa -3'
miRNA:   3'- aUCGGu---GCUACCG-------CGCCGaACUACCc -5'
19015 5' -57.2 NC_004684.1 + 58560 0.71 0.36682
Target:  5'- aUGGCCagucggGCGAUGGCGUcguugcgGGuCUUGAUGGc -3'
miRNA:   3'- -AUCGG------UGCUACCGCG-------CC-GAACUACCc -5'
19015 5' -57.2 NC_004684.1 + 66643 0.71 0.376247
Target:  5'- gUGGCCACGAUGGCcucgGCGGCggcccGGu -3'
miRNA:   3'- -AUCGGUGCUACCG----CGCCGaacuaCCc -5'
19015 5' -57.2 NC_004684.1 + 23768 0.7 0.402773
Target:  5'- gGGCCGUGG-GGCGCGGCgu--UGGGc -3'
miRNA:   3'- aUCGGUGCUaCCGCGCCGaacuACCC- -5'
19015 5' -57.2 NC_004684.1 + 36086 0.7 0.421103
Target:  5'- gAGCCGCGAUGGgaggcaaGCGcGC--GGUGGGu -3'
miRNA:   3'- aUCGGUGCUACCg------CGC-CGaaCUACCC- -5'
19015 5' -57.2 NC_004684.1 + 5520 0.69 0.449517
Target:  5'- -cGCCcUGGUGGCGCaGC-UGGUGGa -3'
miRNA:   3'- auCGGuGCUACCGCGcCGaACUACCc -5'
19015 5' -57.2 NC_004684.1 + 46597 0.69 0.472991
Target:  5'- cGGCgGCGAcGGCgGCGGUUUGGUacgagcgcaguucgcGGGg -3'
miRNA:   3'- aUCGgUGCUaCCG-CGCCGAACUA---------------CCC- -5'
19015 5' -57.2 NC_004684.1 + 64828 0.69 0.487972
Target:  5'- gGGCCAUGGUguccuccuugguaGGCG-GGUgguugUGGUGGGg -3'
miRNA:   3'- aUCGGUGCUA-------------CCGCgCCGa----ACUACCC- -5'
19015 5' -57.2 NC_004684.1 + 7811 0.68 0.509311
Target:  5'- --aCCG-GGUGGUGCGGCU-GAUGGa -3'
miRNA:   3'- aucGGUgCUACCGCGCCGAaCUACCc -5'
19015 5' -57.2 NC_004684.1 + 30486 0.68 0.51961
Target:  5'- cGGCUAUGAcccgagcgUGGgGCGGCUggcGcUGGGg -3'
miRNA:   3'- aUCGGUGCU--------ACCgCGCCGAa--CuACCC- -5'
19015 5' -57.2 NC_004684.1 + 23211 0.68 0.51961
Target:  5'- aGGCCGcCGGUGGCGaCGGCggguuccUGAaaUGGc -3'
miRNA:   3'- aUCGGU-GCUACCGC-GCCGa------ACU--ACCc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.