Results 1 - 20 of 204 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
19021 | 3' | -65.2 | NC_004684.1 | + | 3422 | 0.66 | 0.319676 |
Target: 5'- gGCACCGCU--GGCCG-CCACagucagCGGCAc -3' miRNA: 3'- gUGUGGCGGccCCGGCuGGUG------GCCGU- -5' |
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19021 | 3' | -65.2 | NC_004684.1 | + | 7540 | 0.66 | 0.294434 |
Target: 5'- cCugGCCGCCGuGG-CGGCguucugguucgccuaCACCGGCAc -3' miRNA: 3'- -GugUGGCGGCcCCgGCUG---------------GUGGCCGU- -5' |
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19021 | 3' | -65.2 | NC_004684.1 | + | 9808 | 0.66 | 0.327706 |
Target: 5'- -cCACCGUCGGuagguugcgggcgauGUCGGCCaACCGGCGc -3' miRNA: 3'- guGUGGCGGCCc--------------CGGCUGG-UGGCCGU- -5' |
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19021 | 3' | -65.2 | NC_004684.1 | + | 56328 | 0.66 | 0.326235 |
Target: 5'- cCGCGCUGCgcgaguucaugucCGGGGagauCGACCAgcugaucgcCCGGCAc -3' miRNA: 3'- -GUGUGGCG-------------GCCCCg---GCUGGU---------GGCCGU- -5' |
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19021 | 3' | -65.2 | NC_004684.1 | + | 16356 | 0.66 | 0.319676 |
Target: 5'- gCugGCCgacaaGCUGGcGGCCGAguaCACCcGGCAc -3' miRNA: 3'- -GugUGG-----CGGCC-CCGGCUg--GUGG-CCGU- -5' |
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19021 | 3' | -65.2 | NC_004684.1 | + | 53285 | 0.66 | 0.32697 |
Target: 5'- cCAC-CCaCCGGGGCUGAgCCAcaccacCCGGUc -3' miRNA: 3'- -GUGuGGcGGCCCCGGCU-GGU------GGCCGu -5' |
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19021 | 3' | -65.2 | NC_004684.1 | + | 1485 | 0.66 | 0.32697 |
Target: 5'- aCGCGCCGgaGGuGGCCcgccuguugcgcGACCACuaCGGCGu -3' miRNA: 3'- -GUGUGGCggCC-CCGG------------CUGGUG--GCCGU- -5' |
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19021 | 3' | -65.2 | NC_004684.1 | + | 23000 | 0.66 | 0.32697 |
Target: 5'- --aACgGCCuGGGCCGacugGCCGCCgucGGCAg -3' miRNA: 3'- gugUGgCGGcCCCGGC----UGGUGG---CCGU- -5' |
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19021 | 3' | -65.2 | NC_004684.1 | + | 61684 | 0.66 | 0.32697 |
Target: 5'- gCACGCCauuggcgucgguGCCGuGGGCaGGCCGggccCCGGCc -3' miRNA: 3'- -GUGUGG------------CGGC-CCCGgCUGGU----GGCCGu -5' |
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19021 | 3' | -65.2 | NC_004684.1 | + | 58110 | 0.66 | 0.298531 |
Target: 5'- aGCAUgGCCGGGuCCGcgaacaacGCgACCGGCu -3' miRNA: 3'- gUGUGgCGGCCCcGGC--------UGgUGGCCGu -5' |
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19021 | 3' | -65.2 | NC_004684.1 | + | 26582 | 0.66 | 0.319676 |
Target: 5'- gCGCGCgGCggugugCGcGGGUUcGCCACCGGCGg -3' miRNA: 3'- -GUGUGgCG------GC-CCCGGcUGGUGGCCGU- -5' |
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19021 | 3' | -65.2 | NC_004684.1 | + | 56804 | 0.66 | 0.32697 |
Target: 5'- gAUGCCGUCGGugacggacguGGCCaucgaccacGACCACCuGGCGc -3' miRNA: 3'- gUGUGGCGGCC----------CCGG---------CUGGUGG-CCGU- -5' |
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19021 | 3' | -65.2 | NC_004684.1 | + | 34143 | 0.66 | 0.32697 |
Target: 5'- -uCGCCGCCucgGGcGGCaCGGugcugcUCACCGGCAc -3' miRNA: 3'- guGUGGCGG---CC-CCG-GCU------GGUGGCCGU- -5' |
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19021 | 3' | -65.2 | NC_004684.1 | + | 22171 | 0.66 | 0.291727 |
Target: 5'- aGCACCGCa-GGGCCacggcggcggcGACCGCCuucggacuGGCGc -3' miRNA: 3'- gUGUGGCGgcCCCGG-----------CUGGUGG--------CCGU- -5' |
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19021 | 3' | -65.2 | NC_004684.1 | + | 54793 | 0.66 | 0.32697 |
Target: 5'- aGCGCgCGCCaGGaGCCGAUgACCcuGGCu -3' miRNA: 3'- gUGUG-GCGGcCC-CGGCUGgUGG--CCGu -5' |
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19021 | 3' | -65.2 | NC_004684.1 | + | 43370 | 0.66 | 0.291727 |
Target: 5'- gGCACCuuGCCGGaaCCGAUCACguCGGCGa -3' miRNA: 3'- gUGUGG--CGGCCccGGCUGGUG--GCCGU- -5' |
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19021 | 3' | -65.2 | NC_004684.1 | + | 397 | 0.66 | 0.291727 |
Target: 5'- -uCACCGCCGuggcGGGCaagcugGGCgACUGGCAc -3' miRNA: 3'- guGUGGCGGC----CCCGg-----CUGgUGGCCGU- -5' |
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19021 | 3' | -65.2 | NC_004684.1 | + | 54210 | 0.66 | 0.291727 |
Target: 5'- gGC-CUGCuCGGGGCCGAgguCgGCCaGCAg -3' miRNA: 3'- gUGuGGCG-GCCCCGGCU---GgUGGcCGU- -5' |
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19021 | 3' | -65.2 | NC_004684.1 | + | 56886 | 0.66 | 0.291727 |
Target: 5'- cCugACCGUCGGcGGCCcaGugCGUCGGCc -3' miRNA: 3'- -GugUGGCGGCC-CCGG--CugGUGGCCGu -5' |
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19021 | 3' | -65.2 | NC_004684.1 | + | 13106 | 0.66 | 0.312505 |
Target: 5'- gCACGCCGCCcca-CCGGCCAgCgCGGCAg -3' miRNA: 3'- -GUGUGGCGGccccGGCUGGU-G-GCCGU- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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