miRNA display CGI


Results 1 - 20 of 204 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
19021 3' -65.2 NC_004684.1 + 39332 1.07 0.000236
Target:  5'- cCACACCGCCGGGGCCGACCACCGGCAu -3'
miRNA:   3'- -GUGUGGCGGCCCCGGCUGGUGGCCGU- -5'
19021 3' -65.2 NC_004684.1 + 25931 0.81 0.022745
Target:  5'- aGCACCGCCGGGGUCaGCCcacugacACCGGCGg -3'
miRNA:   3'- gUGUGGCGGCCCCGGcUGG-------UGGCCGU- -5'
19021 3' -65.2 NC_004684.1 + 61312 0.78 0.040353
Target:  5'- aGCACCGCCGccGGGCCG-CCGCCcucGGCGg -3'
miRNA:   3'- gUGUGGCGGC--CCCGGCuGGUGG---CCGU- -5'
19021 3' -65.2 NC_004684.1 + 7503 0.77 0.051434
Target:  5'- uGCGCCGCCgcaucGGGGUgGACCugcCCGGCAc -3'
miRNA:   3'- gUGUGGCGG-----CCCCGgCUGGu--GGCCGU- -5'
19021 3' -65.2 NC_004684.1 + 47233 0.76 0.055747
Target:  5'- aACGCCGCaaGGGCCGGgccgUCACCGGCGa -3'
miRNA:   3'- gUGUGGCGgcCCCGGCU----GGUGGCCGU- -5'
19021 3' -65.2 NC_004684.1 + 10380 0.76 0.060411
Target:  5'- gCGCACCGCCGGGuaCCaGGCCGCCaGCGu -3'
miRNA:   3'- -GUGUGGCGGCCCc-GG-CUGGUGGcCGU- -5'
19021 3' -65.2 NC_004684.1 + 41448 0.76 0.060411
Target:  5'- --uGCCGCCggugucaguGGGGCUGACC-CCGGCGg -3'
miRNA:   3'- gugUGGCGG---------CCCCGGCUGGuGGCCGU- -5'
19021 3' -65.2 NC_004684.1 + 12871 0.76 0.063728
Target:  5'- -cCACCGCCGaGGCCG-CCGCCGGgGa -3'
miRNA:   3'- guGUGGCGGCcCCGGCuGGUGGCCgU- -5'
19021 3' -65.2 NC_004684.1 + 64320 0.75 0.069035
Target:  5'- aGCACggaGCgGGGGUCGAUCAUCGGCGc -3'
miRNA:   3'- gUGUGg--CGgCCCCGGCUGGUGGCCGU- -5'
19021 3' -65.2 NC_004684.1 + 42077 0.75 0.069035
Target:  5'- aUACGCCGCCaGGGCCGacgaaccgccGCCGCCuGGUg -3'
miRNA:   3'- -GUGUGGCGGcCCCGGC----------UGGUGG-CCGu -5'
19021 3' -65.2 NC_004684.1 + 4790 0.75 0.074766
Target:  5'- aGCGCCucgGCgCGGuGGCCGACCGCaaCGGCAa -3'
miRNA:   3'- gUGUGG---CG-GCC-CCGGCUGGUG--GCCGU- -5'
19021 3' -65.2 NC_004684.1 + 43344 0.75 0.076776
Target:  5'- --uGCCGUCGGGGuuGAUCACCGcGCc -3'
miRNA:   3'- gugUGGCGGCCCCggCUGGUGGC-CGu -5'
19021 3' -65.2 NC_004684.1 + 45089 0.75 0.077594
Target:  5'- uGCGCCGCCaGGaGGCCGACUugucguugaaggugaACCGGUc -3'
miRNA:   3'- gUGUGGCGG-CC-CCGGCUGG---------------UGGCCGu -5'
19021 3' -65.2 NC_004684.1 + 729 0.74 0.078837
Target:  5'- gGCACCGCCGGugaccgGGCCG-CCGCCgaGGCc -3'
miRNA:   3'- gUGUGGCGGCC------CCGGCuGGUGG--CCGu -5'
19021 3' -65.2 NC_004684.1 + 25073 0.74 0.078837
Target:  5'- gCGCACCGgcaaCGuGGCCGACCucCCGGCAg -3'
miRNA:   3'- -GUGUGGCg---GCcCCGGCUGGu-GGCCGU- -5'
19021 3' -65.2 NC_004684.1 + 45102 0.74 0.08312
Target:  5'- gGCACCGCCGccgcgcGGGCCuuGGCCGCCgccaGGCGg -3'
miRNA:   3'- gUGUGGCGGC------CCCGG--CUGGUGG----CCGU- -5'
19021 3' -65.2 NC_004684.1 + 49046 0.74 0.085344
Target:  5'- cCGCGCCGCCggucggcuccGGGGgCGG-CACCGGCGu -3'
miRNA:   3'- -GUGUGGCGG----------CCCCgGCUgGUGGCCGU- -5'
19021 3' -65.2 NC_004684.1 + 6067 0.74 0.087625
Target:  5'- cUACGCCGCCGaGGG-CGGCgGCCcGGCGg -3'
miRNA:   3'- -GUGUGGCGGC-CCCgGCUGgUGG-CCGU- -5'
19021 3' -65.2 NC_004684.1 + 15512 0.74 0.087625
Target:  5'- aAgGCCGcCCGGGGCCGGgCGCUGGa- -3'
miRNA:   3'- gUgUGGC-GGCCCCGGCUgGUGGCCgu -5'
19021 3' -65.2 NC_004684.1 + 18330 0.74 0.089963
Target:  5'- gCACGCCGgugccgcccCCGGaGCCGACCGgCGGCGc -3'
miRNA:   3'- -GUGUGGC---------GGCCcCGGCUGGUgGCCGU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.