miRNA display CGI


Results 1 - 20 of 204 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
19021 3' -65.2 NC_004684.1 + 397 0.66 0.291727
Target:  5'- -uCACCGCCGuggcGGGCaagcugGGCgACUGGCAc -3'
miRNA:   3'- guGUGGCGGC----CCCGg-----CUGgUGGCCGU- -5'
19021 3' -65.2 NC_004684.1 + 496 0.69 0.18932
Target:  5'- cCGCGCCGaaGGccgcGCCGaaggucGCCACCGGCGc -3'
miRNA:   3'- -GUGUGGCggCCc---CGGC------UGGUGGCCGU- -5'
19021 3' -65.2 NC_004684.1 + 729 0.74 0.078837
Target:  5'- gGCACCGCCGGugaccgGGCCG-CCGCCgaGGCc -3'
miRNA:   3'- gUGUGGCGGCC------CCGGCuGGUGG--CCGu -5'
19021 3' -65.2 NC_004684.1 + 1485 0.66 0.32697
Target:  5'- aCGCGCCGgaGGuGGCCcgccuguugcgcGACCACuaCGGCGu -3'
miRNA:   3'- -GUGUGGCggCC-CCGG------------CUGGUG--GCCGU- -5'
19021 3' -65.2 NC_004684.1 + 1796 0.67 0.270138
Target:  5'- gACGCCGCCGugcggcucaugaccGaggccauggcGGCUGACCugCGGUAu -3'
miRNA:   3'- gUGUGGCGGC--------------C----------CCGGCUGGugGCCGU- -5'
19021 3' -65.2 NC_004684.1 + 1909 0.69 0.180131
Target:  5'- cCGCACCuGCCGGacccGGCCuGCCgggccugguACCGGCGc -3'
miRNA:   3'- -GUGUGG-CGGCC----CCGGcUGG---------UGGCCGU- -5'
19021 3' -65.2 NC_004684.1 + 2277 0.68 0.229176
Target:  5'- gGCAUUGCCGccagccuGGGCCacgacgcggugcuGACCGCCGuGCAc -3'
miRNA:   3'- gUGUGGCGGC-------CCCGG-------------CUGGUGGC-CGU- -5'
19021 3' -65.2 NC_004684.1 + 2449 0.67 0.285046
Target:  5'- uCGC-CCGCCuGGG-CGGCCAgcUCGGCGu -3'
miRNA:   3'- -GUGuGGCGGcCCCgGCUGGU--GGCCGU- -5'
19021 3' -65.2 NC_004684.1 + 3422 0.66 0.319676
Target:  5'- gGCACCGCU--GGCCG-CCACagucagCGGCAc -3'
miRNA:   3'- gUGUGGCGGccCCGGCuGGUG------GCCGU- -5'
19021 3' -65.2 NC_004684.1 + 3512 0.7 0.167089
Target:  5'- gGCACCGCUGGGcccgaugaagGCCG-CCACgCGcGCAc -3'
miRNA:   3'- gUGUGGCGGCCC----------CGGCuGGUG-GC-CGU- -5'
19021 3' -65.2 NC_004684.1 + 3514 0.67 0.278485
Target:  5'- cCGCaAUCGCCGacggguGGGCCGACCuggCGGUg -3'
miRNA:   3'- -GUG-UGGCGGC------CCCGGCUGGug-GCCGu -5'
19021 3' -65.2 NC_004684.1 + 4010 0.66 0.297845
Target:  5'- cUACGCCGCCaucggcuGGcGcGUCGGCCGCuCGGUg -3'
miRNA:   3'- -GUGUGGCGG-------CC-C-CGGCUGGUG-GCCGu -5'
19021 3' -65.2 NC_004684.1 + 4153 0.7 0.162933
Target:  5'- --aGCUGCUcGGGCCGACgC-CCGGCAa -3'
miRNA:   3'- gugUGGCGGcCCCGGCUG-GuGGCCGU- -5'
19021 3' -65.2 NC_004684.1 + 4292 0.66 0.318954
Target:  5'- aAUGCCGCCGGGucGCCGuaauguagugcuuGCaCGgCGGCAc -3'
miRNA:   3'- gUGUGGCGGCCC--CGGC-------------UG-GUgGCCGU- -5'
19021 3' -65.2 NC_004684.1 + 4416 0.67 0.259527
Target:  5'- cCugGCCGCCGGaacaacgcGCgGGCCuGCUGGCGc -3'
miRNA:   3'- -GugUGGCGGCCc-------CGgCUGG-UGGCCGU- -5'
19021 3' -65.2 NC_004684.1 + 4456 0.67 0.247482
Target:  5'- gCGCGCCGCgCGcuGGUCGGCuucguCACCGGCc -3'
miRNA:   3'- -GUGUGGCG-GCc-CCGGCUG-----GUGGCCGu -5'
19021 3' -65.2 NC_004684.1 + 4790 0.75 0.074766
Target:  5'- aGCGCCucgGCgCGGuGGCCGACCGCaaCGGCAa -3'
miRNA:   3'- gUGUGG---CG-GCC-CCGGCUGGUG--GCCGU- -5'
19021 3' -65.2 NC_004684.1 + 5593 0.69 0.194067
Target:  5'- cCGCcuGCCGaCGGGGCCGA--GCUGGCGc -3'
miRNA:   3'- -GUG--UGGCgGCCCCGGCUggUGGCCGU- -5'
19021 3' -65.2 NC_004684.1 + 5686 0.66 0.305457
Target:  5'- ---gUgGCCGGGGcCCGGCCugcccaCGGCAc -3'
miRNA:   3'- guguGgCGGCCCC-GGCUGGug----GCCGU- -5'
19021 3' -65.2 NC_004684.1 + 5915 0.68 0.214109
Target:  5'- uCGCGCaCGaCCGGcuGGCCGcgcugGCCACCGGgCGg -3'
miRNA:   3'- -GUGUG-GC-GGCC--CCGGC-----UGGUGGCC-GU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.