miRNA display CGI


Results 1 - 20 of 204 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
19021 3' -65.2 NC_004684.1 + 31088 0.72 0.126246
Target:  5'- --uGCCGCCGaGGGCUGGCaggaCGCCGcGCAg -3'
miRNA:   3'- gugUGGCGGC-CCCGGCUG----GUGGC-CGU- -5'
19021 3' -65.2 NC_004684.1 + 26317 0.73 0.097338
Target:  5'- cCAgGCCGCCGGGccGCCGAUUGCCGacGCGg -3'
miRNA:   3'- -GUgUGGCGGCCC--CGGCUGGUGGC--CGU- -5'
19021 3' -65.2 NC_004684.1 + 11916 0.73 0.09966
Target:  5'- gGCACCaccgacaGCCaGGGCCGuCCGCUGGCc -3'
miRNA:   3'- gUGUGG-------CGGcCCCGGCuGGUGGCCGu -5'
19021 3' -65.2 NC_004684.1 + 11657 0.73 0.102569
Target:  5'- cCACGCCaGCaCGGcGGCCaacguGACCGCCGcGCAa -3'
miRNA:   3'- -GUGUGG-CG-GCC-CCGG-----CUGGUGGC-CGU- -5'
19021 3' -65.2 NC_004684.1 + 28044 0.72 0.119581
Target:  5'- aGCGCgagaucaUGCCGGuGGUCGGCC-CCGGCGg -3'
miRNA:   3'- gUGUG-------GCGGCC-CCGGCUGGuGGCCGU- -5'
19021 3' -65.2 NC_004684.1 + 12951 0.72 0.12303
Target:  5'- gGCACCcCCGGugcucccGCCGACCGgCGGCAg -3'
miRNA:   3'- gUGUGGcGGCCc------CGGCUGGUgGCCGU- -5'
19021 3' -65.2 NC_004684.1 + 22625 0.72 0.12303
Target:  5'- gGCGCUGUgGGaGGCCGccGCCAgCGGCGa -3'
miRNA:   3'- gUGUGGCGgCC-CCGGC--UGGUgGCCGU- -5'
19021 3' -65.2 NC_004684.1 + 34232 0.72 0.126246
Target:  5'- gACACCGCC-GGGCCaACgGgCGGCAa -3'
miRNA:   3'- gUGUGGCGGcCCCGGcUGgUgGCCGU- -5'
19021 3' -65.2 NC_004684.1 + 24487 0.72 0.126246
Target:  5'- gCGCuACCGCCGGGGgCGguGCCGCagGGCc -3'
miRNA:   3'- -GUG-UGGCGGCCCCgGC--UGGUGg-CCGu -5'
19021 3' -65.2 NC_004684.1 + 11152 0.73 0.094819
Target:  5'- uCGCGCCGUCGGuGGaCCuGGCCGCCaGCGa -3'
miRNA:   3'- -GUGUGGCGGCC-CC-GG-CUGGUGGcCGU- -5'
19021 3' -65.2 NC_004684.1 + 49969 0.74 0.089963
Target:  5'- uGC-CCGCCGucGCUGugCACCGGCAc -3'
miRNA:   3'- gUGuGGCGGCccCGGCugGUGGCCGU- -5'
19021 3' -65.2 NC_004684.1 + 20771 0.74 0.089963
Target:  5'- cCACACCGgaggCGGuGGCCccgaaGCCACCGGCAc -3'
miRNA:   3'- -GUGUGGCg---GCC-CCGGc----UGGUGGCCGU- -5'
19021 3' -65.2 NC_004684.1 + 10380 0.76 0.060411
Target:  5'- gCGCACCGCCGGGuaCCaGGCCGCCaGCGu -3'
miRNA:   3'- -GUGUGGCGGCCCc-GG-CUGGUGGcCGU- -5'
19021 3' -65.2 NC_004684.1 + 41448 0.76 0.060411
Target:  5'- --uGCCGCCggugucaguGGGGCUGACC-CCGGCGg -3'
miRNA:   3'- gugUGGCGG---------CCCCGGCUGGuGGCCGU- -5'
19021 3' -65.2 NC_004684.1 + 12871 0.76 0.063728
Target:  5'- -cCACCGCCGaGGCCG-CCGCCGGgGa -3'
miRNA:   3'- guGUGGCGGCcCCGGCuGGUGGCCgU- -5'
19021 3' -65.2 NC_004684.1 + 45089 0.75 0.077594
Target:  5'- uGCGCCGCCaGGaGGCCGACUugucguugaaggugaACCGGUc -3'
miRNA:   3'- gUGUGGCGG-CC-CCGGCUGG---------------UGGCCGu -5'
19021 3' -65.2 NC_004684.1 + 25073 0.74 0.078837
Target:  5'- gCGCACCGgcaaCGuGGCCGACCucCCGGCAg -3'
miRNA:   3'- -GUGUGGCg---GCcCCGGCUGGu-GGCCGU- -5'
19021 3' -65.2 NC_004684.1 + 15512 0.74 0.087625
Target:  5'- aAgGCCGcCCGGGGCCGGgCGCUGGa- -3'
miRNA:   3'- gUgUGGC-GGCCCCGGCUgGUGGCCgu -5'
19021 3' -65.2 NC_004684.1 + 18330 0.74 0.089963
Target:  5'- gCACGCCGgugccgcccCCGGaGCCGACCGgCGGCGc -3'
miRNA:   3'- -GUGUGGC---------GGCCcCGGCUGGUgGCCGU- -5'
19021 3' -65.2 NC_004684.1 + 19271 0.74 0.089963
Target:  5'- --uGCCGCCGGaGCCGgaGCCACCuGGCGa -3'
miRNA:   3'- gugUGGCGGCCcCGGC--UGGUGG-CCGU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.