Results 1 - 20 of 57 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
19040 | 5' | -57.3 | NC_004684.1 | + | 27084 | 0.66 | 0.644643 |
Target: 5'- cGUGGACAUCGcCGCCCAGaucgguaccgacuUUgCGCUg -3' miRNA: 3'- cCACCUGUGGCcGUGGGUC-------------AAgGUGA- -5' |
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19040 | 5' | -57.3 | NC_004684.1 | + | 27743 | 0.66 | 0.64571 |
Target: 5'- --cGGAgGCCGGUACCUggaGGUgaccgugCCGCg -3' miRNA: 3'- ccaCCUgUGGCCGUGGG---UCAa------GGUGa -5' |
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19040 | 5' | -57.3 | NC_004684.1 | + | 25569 | 0.66 | 0.688203 |
Target: 5'- --cGGugGCCaGCGCCUccgGGUggUCCACg -3' miRNA: 3'- ccaCCugUGGcCGUGGG---UCA--AGGUGa -5' |
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19040 | 5' | -57.3 | NC_004684.1 | + | 30776 | 0.66 | 0.692419 |
Target: 5'- aGGUGGACGggugggugcugcuguCCGGCACCUAcaccGUgCCGu- -3' miRNA: 3'- -CCACCUGU---------------GGCCGUGGGU----CAaGGUga -5' |
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19040 | 5' | -57.3 | NC_004684.1 | + | 24764 | 0.66 | 0.677631 |
Target: 5'- uGGcagGGAagACCGGCACCgGG--CCGCUg -3' miRNA: 3'- -CCa--CCUg-UGGCCGUGGgUCaaGGUGA- -5' |
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19040 | 5' | -57.3 | NC_004684.1 | + | 19403 | 0.66 | 0.677631 |
Target: 5'- uGUGGGCguucACCGGUcgCCAGUUCgGCc -3' miRNA: 3'- cCACCUG----UGGCCGugGGUCAAGgUGa -5' |
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19040 | 5' | -57.3 | NC_004684.1 | + | 14123 | 0.66 | 0.677631 |
Target: 5'- aGGUGa--ACCGGUacACCCGGUUCUucACg -3' miRNA: 3'- -CCACcugUGGCCG--UGGGUCAAGG--UGa -5' |
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19040 | 5' | -57.3 | NC_004684.1 | + | 57602 | 0.66 | 0.667018 |
Target: 5'- cGGUGGugACCGuGCACgagcgguacggCCAG--CCACc -3' miRNA: 3'- -CCACCugUGGC-CGUG-----------GGUCaaGGUGa -5' |
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19040 | 5' | -57.3 | NC_004684.1 | + | 12679 | 0.66 | 0.667018 |
Target: 5'- uGGUGGAgGCCGaCGaggCCAuUUCCGCUg -3' miRNA: 3'- -CCACCUgUGGCcGUg--GGUcAAGGUGA- -5' |
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19040 | 5' | -57.3 | NC_004684.1 | + | 37240 | 0.66 | 0.645711 |
Target: 5'- cGGUGcucGCACCGGauauCACCCAGacaCCGCc -3' miRNA: 3'- -CCACc--UGUGGCC----GUGGGUCaa-GGUGa -5' |
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19040 | 5' | -57.3 | NC_004684.1 | + | 25214 | 0.66 | 0.645711 |
Target: 5'- gGGUGGcuuCACCGGCACgCUGGa--CGCg -3' miRNA: 3'- -CCACCu--GUGGCCGUG-GGUCaagGUGa -5' |
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19040 | 5' | -57.3 | NC_004684.1 | + | 10331 | 0.66 | 0.656375 |
Target: 5'- aGGUGGugccugccaccGCGCUGGUGCCguGgcCCACc -3' miRNA: 3'- -CCACC-----------UGUGGCCGUGGguCaaGGUGa -5' |
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19040 | 5' | -57.3 | NC_004684.1 | + | 14483 | 0.67 | 0.635034 |
Target: 5'- aGGUGGuuGCCGGUACcacgCCGGUcgCCGgUg -3' miRNA: 3'- -CCACCugUGGCCGUG----GGUCAa-GGUgA- -5' |
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19040 | 5' | -57.3 | NC_004684.1 | + | 40442 | 0.67 | 0.624355 |
Target: 5'- -uUGGuCAgCGGUGCCCAGgcggCCGCc -3' miRNA: 3'- ccACCuGUgGCCGUGGGUCaa--GGUGa -5' |
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19040 | 5' | -57.3 | NC_004684.1 | + | 66670 | 0.67 | 0.613683 |
Target: 5'- --cGGuCACCGGCgguGCCCAGgucuucCCACc -3' miRNA: 3'- ccaCCuGUGGCCG---UGGGUCaa----GGUGa -5' |
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19040 | 5' | -57.3 | NC_004684.1 | + | 66456 | 0.67 | 0.601961 |
Target: 5'- gGGUGGcggcguugucuccACGCCGcCACCCGGUggCgGCUa -3' miRNA: 3'- -CCACC-------------UGUGGCcGUGGGUCAa-GgUGA- -5' |
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19040 | 5' | -57.3 | NC_004684.1 | + | 43293 | 0.67 | 0.603025 |
Target: 5'- --cGGGCugCGGCACCUugaAGUUCgGg- -3' miRNA: 3'- ccaCCUGugGCCGUGGG---UCAAGgUga -5' |
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19040 | 5' | -57.3 | NC_004684.1 | + | 54392 | 0.67 | 0.59133 |
Target: 5'- cGGgGGACAuaauccacccggcCCGGCGCUCGGUguugccugCCGCc -3' miRNA: 3'- -CCaCCUGU-------------GGCCGUGGGUCAa-------GGUGa -5' |
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19040 | 5' | -57.3 | NC_004684.1 | + | 59784 | 0.67 | 0.589207 |
Target: 5'- --cGGGCACCGGaugaaguacacgacCACCgGGUUgCCGCg -3' miRNA: 3'- ccaCCUGUGGCC--------------GUGGgUCAA-GGUGa -5' |
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19040 | 5' | -57.3 | NC_004684.1 | + | 6569 | 0.67 | 0.58179 |
Target: 5'- cGGUGaGuCcguguCCGGCACCUGGUacgCCACg -3' miRNA: 3'- -CCAC-CuGu----GGCCGUGGGUCAa--GGUGa -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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