miRNA display CGI


Results 1 - 20 of 57 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
19040 5' -57.3 NC_004684.1 + 1306 0.68 0.560711
Target:  5'- --cGcGugGCCGGaCAUgCGGUUCCACg -3'
miRNA:   3'- ccaC-CugUGGCC-GUGgGUCAAGGUGa -5'
19040 5' -57.3 NC_004684.1 + 1643 0.68 0.529514
Target:  5'- --cGGGUACCGGCGCCCAaGUggggCCAg- -3'
miRNA:   3'- ccaCCUGUGGCCGUGGGU-CAa---GGUga -5'
19040 5' -57.3 NC_004684.1 + 3446 0.74 0.23888
Target:  5'- cGUGGcCAUgugguaCGGCACCCAGUUCgGCg -3'
miRNA:   3'- cCACCuGUG------GCCGUGGGUCAAGgUGa -5'
19040 5' -57.3 NC_004684.1 + 5033 0.72 0.328412
Target:  5'- cGGUGGcCACCacgcgucuGGCACCCGGcgcucCCACg -3'
miRNA:   3'- -CCACCuGUGG--------CCGUGGGUCaa---GGUGa -5'
19040 5' -57.3 NC_004684.1 + 5681 0.71 0.368905
Target:  5'- cGGaGGugGCCGGgGCCCGGccugcCCACg -3'
miRNA:   3'- -CCaCCugUGGCCgUGGGUCaa---GGUGa -5'
19040 5' -57.3 NC_004684.1 + 6569 0.67 0.58179
Target:  5'- cGGUGaGuCcguguCCGGCACCUGGUacgCCACg -3'
miRNA:   3'- -CCAC-CuGu----GGCCGUGGGUCAa--GGUGa -5'
19040 5' -57.3 NC_004684.1 + 7518 0.68 0.519254
Target:  5'- gGGUGGACcugcCCGGCACCgAccuggCCGCc -3'
miRNA:   3'- -CCACCUGu---GGCCGUGGgUcaa--GGUGa -5'
19040 5' -57.3 NC_004684.1 + 7931 0.69 0.459542
Target:  5'- uGGUGGACaucgccgccgACCGGCGCacaCCGGUgggcaaggCCGCc -3'
miRNA:   3'- -CCACCUG----------UGGCCGUG---GGUCAa-------GGUGa -5'
19040 5' -57.3 NC_004684.1 + 9223 0.73 0.277401
Target:  5'- uGGUGGcggcacagucGCACCGGCucCCCGGUgaucgCCAUg -3'
miRNA:   3'- -CCACC----------UGUGGCCGu-GGGUCAa----GGUGa -5'
19040 5' -57.3 NC_004684.1 + 9556 0.68 0.571227
Target:  5'- gGGcGGGUACCGGCGgCCAGcaCCGCc -3'
miRNA:   3'- -CCaCCUGUGGCCGUgGGUCaaGGUGa -5'
19040 5' -57.3 NC_004684.1 + 10331 0.66 0.656375
Target:  5'- aGGUGGugccugccaccGCGCUGGUGCCguGgcCCACc -3'
miRNA:   3'- -CCACC-----------UGUGGCCGUGGguCaaGGUGa -5'
19040 5' -57.3 NC_004684.1 + 12179 0.67 0.635034
Target:  5'- cGGUGccaACGCCucguaGGCAUCCAGcgCCGCc -3'
miRNA:   3'- -CCACc--UGUGG-----CCGUGGGUCaaGGUGa -5'
19040 5' -57.3 NC_004684.1 + 12679 0.66 0.667018
Target:  5'- uGGUGGAgGCCGaCGaggCCAuUUCCGCUg -3'
miRNA:   3'- -CCACCUgUGGCcGUg--GGUcAAGGUGA- -5'
19040 5' -57.3 NC_004684.1 + 14052 0.69 0.459542
Target:  5'- ------gGCCGGUACCUGGUUCCGCg -3'
miRNA:   3'- ccaccugUGGCCGUGGGUCAAGGUGa -5'
19040 5' -57.3 NC_004684.1 + 14123 0.66 0.677631
Target:  5'- aGGUGa--ACCGGUacACCCGGUUCUucACg -3'
miRNA:   3'- -CCACcugUGGCCG--UGGGUCAAGG--UGa -5'
19040 5' -57.3 NC_004684.1 + 14483 0.67 0.635034
Target:  5'- aGGUGGuuGCCGGUACcacgCCGGUcgCCGgUg -3'
miRNA:   3'- -CCACCugUGGCCGUG----GGUCAa-GGUgA- -5'
19040 5' -57.3 NC_004684.1 + 14564 0.72 0.352305
Target:  5'- -cUGGACACCuGGUGCgCCGGggCCACc -3'
miRNA:   3'- ccACCUGUGG-CCGUG-GGUCaaGGUGa -5'
19040 5' -57.3 NC_004684.1 + 19029 0.67 0.603026
Target:  5'- gGGUuGGCACCGGCGgCCGGgcaggUCAUg -3'
miRNA:   3'- -CCAcCUGUGGCCGUgGGUCaa---GGUGa -5'
19040 5' -57.3 NC_004684.1 + 19403 0.66 0.677631
Target:  5'- uGUGGGCguucACCGGUcgCCAGUUCgGCc -3'
miRNA:   3'- cCACCUG----UGGCCGugGGUCAAGgUGa -5'
19040 5' -57.3 NC_004684.1 + 19832 0.68 0.539848
Target:  5'- cGUGuGACGgCGGCGCaugCCGGUUgCCGCg -3'
miRNA:   3'- cCAC-CUGUgGCCGUG---GGUCAA-GGUGa -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.