miRNA display CGI


Results 1 - 20 of 57 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
19040 5' -57.3 NC_004684.1 + 43933 0.67 0.635034
Target:  5'- uGGcGGGCAUUGGCuCCCAGgUCuCGCc -3'
miRNA:   3'- -CCaCCUGUGGCCGuGGGUCaAG-GUGa -5'
19040 5' -57.3 NC_004684.1 + 49981 0.68 0.560711
Target:  5'- -cUGuGCACCGGCACaCCA--UCCACa -3'
miRNA:   3'- ccACcUGUGGCCGUG-GGUcaAGGUGa -5'
19040 5' -57.3 NC_004684.1 + 1306 0.68 0.560711
Target:  5'- --cGcGugGCCGGaCAUgCGGUUCCACg -3'
miRNA:   3'- ccaC-CugUGGCC-GUGgGUCAAGGUGa -5'
19040 5' -57.3 NC_004684.1 + 66456 0.67 0.601961
Target:  5'- gGGUGGcggcguugucuccACGCCGcCACCCGGUggCgGCUa -3'
miRNA:   3'- -CCACC-------------UGUGGCcGUGGGUCAa-GgUGA- -5'
19040 5' -57.3 NC_004684.1 + 19029 0.67 0.603026
Target:  5'- gGGUuGGCACCGGCGgCCGGgcaggUCAUg -3'
miRNA:   3'- -CCAcCUGUGGCCGUgGGUCaa---GGUGa -5'
19040 5' -57.3 NC_004684.1 + 36316 0.67 0.603026
Target:  5'- cGGUGGACcaacaacucGCCGGUGCCgCAGUgggUgUACg -3'
miRNA:   3'- -CCACCUG---------UGGCCGUGG-GUCA---AgGUGa -5'
19040 5' -57.3 NC_004684.1 + 66670 0.67 0.613683
Target:  5'- --cGGuCACCGGCgguGCCCAGgucuucCCACc -3'
miRNA:   3'- ccaCCuGUGGCCG---UGGGUCaa----GGUGa -5'
19040 5' -57.3 NC_004684.1 + 40442 0.67 0.624355
Target:  5'- -uUGGuCAgCGGUGCCCAGgcggCCGCc -3'
miRNA:   3'- ccACCuGUgGCCGUGGGUCaa--GGUGa -5'
19040 5' -57.3 NC_004684.1 + 14483 0.67 0.635034
Target:  5'- aGGUGGuuGCCGGUACcacgCCGGUcgCCGgUg -3'
miRNA:   3'- -CCACCugUGGCCGUG----GGUCAa-GGUgA- -5'
19040 5' -57.3 NC_004684.1 + 19832 0.68 0.539848
Target:  5'- cGUGuGACGgCGGCGCaugCCGGUUgCCGCg -3'
miRNA:   3'- cCAC-CUGUgGCCGUG---GGUCAA-GGUGa -5'
19040 5' -57.3 NC_004684.1 + 63448 0.68 0.529514
Target:  5'- cGUGGuCGCCuucGcCGCCCAGUUCCGg- -3'
miRNA:   3'- cCACCuGUGGc--C-GUGGGUCAAGGUga -5'
19040 5' -57.3 NC_004684.1 + 33488 0.68 0.529514
Target:  5'- cGGUGGACGCggCGGCGgCCCuGUaCuCGCg -3'
miRNA:   3'- -CCACCUGUG--GCCGU-GGGuCAaG-GUGa -5'
19040 5' -57.3 NC_004684.1 + 27351 0.76 0.1997
Target:  5'- cGUGGGCACCGGCaugauGCCCAaggCCACc -3'
miRNA:   3'- cCACCUGUGGCCG-----UGGGUcaaGGUGa -5'
19040 5' -57.3 NC_004684.1 + 52824 0.73 0.298451
Target:  5'- cGGUGGcC-CCGGCGCaCCAGgugUCCAg- -3'
miRNA:   3'- -CCACCuGuGGCCGUG-GGUCa--AGGUga -5'
19040 5' -57.3 NC_004684.1 + 5033 0.72 0.328412
Target:  5'- cGGUGGcCACCacgcgucuGGCACCCGGcgcucCCACg -3'
miRNA:   3'- -CCACCuGUGG--------CCGUGGGUCaa---GGUGa -5'
19040 5' -57.3 NC_004684.1 + 36464 0.72 0.352305
Target:  5'- uGGUGGACGugagcaagugCGGCACCgGGUUCgACa -3'
miRNA:   3'- -CCACCUGUg---------GCCGUGGgUCAAGgUGa -5'
19040 5' -57.3 NC_004684.1 + 14052 0.69 0.459542
Target:  5'- ------gGCCGGUACCUGGUUCCGCg -3'
miRNA:   3'- ccaccugUGGCCGUGGGUCAAGGUGa -5'
19040 5' -57.3 NC_004684.1 + 33902 0.69 0.513136
Target:  5'- cGGUGGGCGCggacagauaugggcgCGcGCAUCCAGUgaCCGCc -3'
miRNA:   3'- -CCACCUGUG---------------GC-CGUGGGUCAa-GGUGa -5'
19040 5' -57.3 NC_004684.1 + 31891 0.68 0.519254
Target:  5'- uGGUGGACGCCGGgACgUug-UUCGCg -3'
miRNA:   3'- -CCACCUGUGGCCgUGgGucaAGGUGa -5'
19040 5' -57.3 NC_004684.1 + 1643 0.68 0.529514
Target:  5'- --cGGGUACCGGCGCCCAaGUggggCCAg- -3'
miRNA:   3'- ccaCCUGUGGCCGUGGGU-CAa---GGUga -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.