miRNA display CGI


Results 1 - 20 of 57 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
19040 5' -57.3 NC_004684.1 + 32192 1.1 0.00071
Target:  5'- aGGUGGACACCGGCACCCAGUUCCACUg -3'
miRNA:   3'- -CCACCUGUGGCCGUGGGUCAAGGUGA- -5'
19040 5' -57.3 NC_004684.1 + 65756 0.83 0.063699
Target:  5'- -uUGGGCGCCGGUACCCGGUUgCGCc -3'
miRNA:   3'- ccACCUGUGGCCGUGGGUCAAgGUGa -5'
19040 5' -57.3 NC_004684.1 + 28254 0.76 0.189581
Target:  5'- cGGUGGAC-CCGGCcaGCCUGGUgcgcgaggCCGCUg -3'
miRNA:   3'- -CCACCUGuGGCCG--UGGGUCAa-------GGUGA- -5'
19040 5' -57.3 NC_004684.1 + 27351 0.76 0.1997
Target:  5'- cGUGGGCACCGGCaugauGCCCAaggCCACc -3'
miRNA:   3'- cCACCUGUGGCCG-----UGGGUcaaGGUGa -5'
19040 5' -57.3 NC_004684.1 + 40355 0.75 0.227071
Target:  5'- aGGcUGGACacaaugccACCGGCACCCGGUgCCugGCUg -3'
miRNA:   3'- -CC-ACCUG--------UGGCCGUGGGUCAaGG--UGA- -5'
19040 5' -57.3 NC_004684.1 + 3446 0.74 0.23888
Target:  5'- cGUGGcCAUgugguaCGGCACCCAGUUCgGCg -3'
miRNA:   3'- cCACCuGUG------GCCGUGGGUCAAGgUGa -5'
19040 5' -57.3 NC_004684.1 + 9223 0.73 0.277401
Target:  5'- uGGUGGcggcacagucGCACCGGCucCCCGGUgaucgCCAUg -3'
miRNA:   3'- -CCACC----------UGUGGCCGu-GGGUCAa----GGUGa -5'
19040 5' -57.3 NC_004684.1 + 35913 0.73 0.298451
Target:  5'- cGUGGGCuCCGGCACCgCAGcgCgCGCg -3'
miRNA:   3'- cCACCUGuGGCCGUGG-GUCaaG-GUGa -5'
19040 5' -57.3 NC_004684.1 + 52824 0.73 0.298451
Target:  5'- cGGUGGcC-CCGGCGCaCCAGgugUCCAg- -3'
miRNA:   3'- -CCACCuGuGGCCGUG-GGUCa--AGGUga -5'
19040 5' -57.3 NC_004684.1 + 25170 0.72 0.328411
Target:  5'- cGGUGccGACACCGGCGgCCAcGUcggccaccagcUCCACg -3'
miRNA:   3'- -CCAC--CUGUGGCCGUgGGU-CA-----------AGGUGa -5'
19040 5' -57.3 NC_004684.1 + 5033 0.72 0.328412
Target:  5'- cGGUGGcCACCacgcgucuGGCACCCGGcgcucCCACg -3'
miRNA:   3'- -CCACCuGUGG--------CCGUGGGUCaa---GGUGa -5'
19040 5' -57.3 NC_004684.1 + 14564 0.72 0.352305
Target:  5'- -cUGGACACCuGGUGCgCCGGggCCACc -3'
miRNA:   3'- ccACCUGUGG-CCGUG-GGUCaaGGUGa -5'
19040 5' -57.3 NC_004684.1 + 36464 0.72 0.352305
Target:  5'- uGGUGGACGugagcaagugCGGCACCgGGUUCgACa -3'
miRNA:   3'- -CCACCUGUg---------GCCGUGGgUCAAGgUGa -5'
19040 5' -57.3 NC_004684.1 + 5681 0.71 0.368905
Target:  5'- cGGaGGugGCCGGgGCCCGGccugcCCACg -3'
miRNA:   3'- -CCaCCugUGGCCgUGGGUCaa---GGUGa -5'
19040 5' -57.3 NC_004684.1 + 7931 0.69 0.459542
Target:  5'- uGGUGGACaucgccgccgACCGGCGCacaCCGGUgggcaaggCCGCc -3'
miRNA:   3'- -CCACCUG----------UGGCCGUG---GGUCAa-------GGUGa -5'
19040 5' -57.3 NC_004684.1 + 14052 0.69 0.459542
Target:  5'- ------gGCCGGUACCUGGUUCCGCg -3'
miRNA:   3'- ccaccugUGGCCGUGGGUCAAGGUGa -5'
19040 5' -57.3 NC_004684.1 + 33902 0.69 0.513136
Target:  5'- cGGUGGGCGCggacagauaugggcgCGcGCAUCCAGUgaCCGCc -3'
miRNA:   3'- -CCACCUGUG---------------GC-CGUGGGUCAa-GGUGa -5'
19040 5' -57.3 NC_004684.1 + 7518 0.68 0.519254
Target:  5'- gGGUGGACcugcCCGGCACCgAccuggCCGCc -3'
miRNA:   3'- -CCACCUGu---GGCCGUGGgUcaa--GGUGa -5'
19040 5' -57.3 NC_004684.1 + 31891 0.68 0.519254
Target:  5'- uGGUGGACGCCGGgACgUug-UUCGCg -3'
miRNA:   3'- -CCACCUGUGGCCgUGgGucaAGGUGa -5'
19040 5' -57.3 NC_004684.1 + 52594 0.68 0.519254
Target:  5'- cGGUGGACAgCGcGCcgccguaguuguGCgCCAGUacgUCCACg -3'
miRNA:   3'- -CCACCUGUgGC-CG------------UG-GGUCA---AGGUGa -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.