miRNA display CGI


Results 1 - 20 of 122 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
19047 3' -59.3 NC_004684.1 + 66167 0.66 0.581428
Target:  5'- uUGCUGGCagauccaGCCgGugGUGGUGGUgGuGGc -3'
miRNA:   3'- -ACGGCUG-------UGGgCugCGCCACUAgC-CC- -5'
19047 3' -59.3 NC_004684.1 + 65650 0.66 0.59278
Target:  5'- gUGCgGAcCGCCCucgGugGUGGUGAggUCGcGGc -3'
miRNA:   3'- -ACGgCU-GUGGG---CugCGCCACU--AGC-CC- -5'
19047 3' -59.3 NC_004684.1 + 65008 0.67 0.541606
Target:  5'- cGCCG-CACCCGGCGaaGGUGGccaugUCGa- -3'
miRNA:   3'- aCGGCuGUGGGCUGCg-CCACU-----AGCcc -5'
19047 3' -59.3 NC_004684.1 + 64020 0.66 0.613505
Target:  5'- uUGCCG-CGCuuGACcucggugucgGCGGUG-UCGGc -3'
miRNA:   3'- -ACGGCuGUGggCUG----------CGCCACuAGCCc -5'
19047 3' -59.3 NC_004684.1 + 63905 0.68 0.501753
Target:  5'- cUGgCGGCcacggugcgGCCCGGCGUGGcUGAgcUUGGGc -3'
miRNA:   3'- -ACgGCUG---------UGGGCUGCGCC-ACU--AGCCC- -5'
19047 3' -59.3 NC_004684.1 + 63853 0.68 0.472726
Target:  5'- cUGUCGGUGCCaCGuGCGCGGUGGcggccuucaUCGGGc -3'
miRNA:   3'- -ACGGCUGUGG-GC-UGCGCCACU---------AGCCC- -5'
19047 3' -59.3 NC_004684.1 + 62937 0.66 0.612467
Target:  5'- aGCCGACcagcgcgcggcgcGCgCCGACGaUGGUGGcgugcUCGGu -3'
miRNA:   3'- aCGGCUG-------------UG-GGCUGC-GCCACU-----AGCCc -5'
19047 3' -59.3 NC_004684.1 + 61431 0.68 0.453853
Target:  5'- gGCCGGuCGCucaCCGGCGCGGccaGGUUGGa -3'
miRNA:   3'- aCGGCU-GUG---GGCUGCGCCa--CUAGCCc -5'
19047 3' -59.3 NC_004684.1 + 60957 0.69 0.399826
Target:  5'- gUGCUGuACACCuCGugGCuGGUGGcgUCGGc -3'
miRNA:   3'- -ACGGC-UGUGG-GCugCG-CCACU--AGCCc -5'
19047 3' -59.3 NC_004684.1 + 60612 0.68 0.471773
Target:  5'- gGCCGGuCACCCGGCGCacGUcgcccaugcgcagGGUCGaGGg -3'
miRNA:   3'- aCGGCU-GUGGGCUGCGc-CA-------------CUAGC-CC- -5'
19047 3' -59.3 NC_004684.1 + 58614 0.67 0.56091
Target:  5'- uUGaUCGACgGCCCGugGCGGcUGGUgccgcgcUGGGc -3'
miRNA:   3'- -AC-GGCUG-UGGGCugCGCC-ACUA-------GCCC- -5'
19047 3' -59.3 NC_004684.1 + 57541 0.68 0.463239
Target:  5'- cGgCGGCAgcucaCCGGCgGCGGUGAUCGa- -3'
miRNA:   3'- aCgGCUGUg----GGCUG-CGCCACUAGCcc -5'
19047 3' -59.3 NC_004684.1 + 57507 0.67 0.521532
Target:  5'- cGUCGGCgGCCUGcuccuGCGCGGc-GUCGGGa -3'
miRNA:   3'- aCGGCUG-UGGGC-----UGCGCCacUAGCCC- -5'
19047 3' -59.3 NC_004684.1 + 57309 0.66 0.572173
Target:  5'- gGCUGAgCACCCGGCGCacca--CGGGg -3'
miRNA:   3'- aCGGCU-GUGGGCUGCGccacuaGCCC- -5'
19047 3' -59.3 NC_004684.1 + 56854 0.66 0.59278
Target:  5'- cGCCGACGaugaagcuaCCGGCgaGCGGUGcgccugaccGUCGGcGg -3'
miRNA:   3'- aCGGCUGUg--------GGCUG--CGCCAC---------UAGCC-C- -5'
19047 3' -59.3 NC_004684.1 + 56610 0.72 0.270787
Target:  5'- gUGCCGACG-CCGuCGCGgGUGucgCGGGc -3'
miRNA:   3'- -ACGGCUGUgGGCuGCGC-CACua-GCCC- -5'
19047 3' -59.3 NC_004684.1 + 55949 0.67 0.521532
Target:  5'- gGCCGACG-CCGACGCcgcgcuccagcgGGUcAUCGGc -3'
miRNA:   3'- aCGGCUGUgGGCUGCG------------CCAcUAGCCc -5'
19047 3' -59.3 NC_004684.1 + 55556 0.69 0.408544
Target:  5'- cGCUGGC-CgCCGugGCccGGUGGcCGGGg -3'
miRNA:   3'- aCGGCUGuG-GGCugCG--CCACUaGCCC- -5'
19047 3' -59.3 NC_004684.1 + 55030 0.7 0.36129
Target:  5'- aGCCGAagguggugcgcagugUGCCCaGCGCGGUGAUCa-- -3'
miRNA:   3'- aCGGCU---------------GUGGGcUGCGCCACUAGccc -5'
19047 3' -59.3 NC_004684.1 + 54776 0.69 0.44457
Target:  5'- cGCCGGUGCCCGcaagguGCGCGGcgUGG-CGGGc -3'
miRNA:   3'- aCGGCUGUGGGC------UGCGCC--ACUaGCCC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.