miRNA display CGI


Results 1 - 20 of 71 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
19049 3' -53.7 NC_004684.1 + 66727 0.68 0.727803
Target:  5'- uCAGGCGCacgCUGUcgugcGCGUCGGugUCcuuggGGUCg -3'
miRNA:   3'- -GUUCGCG---GACA-----UGUAGCCugAG-----UCGG- -5'
19049 3' -53.7 NC_004684.1 + 66646 0.72 0.469935
Target:  5'- gGAGCGCCgccaggGCGUCGGugUC-GUCg -3'
miRNA:   3'- gUUCGCGGaca---UGUAGCCugAGuCGG- -5'
19049 3' -53.7 NC_004684.1 + 64943 0.7 0.618959
Target:  5'- uGAGCGCCUGg----CGGGCggUGGCCc -3'
miRNA:   3'- gUUCGCGGACauguaGCCUGa-GUCGG- -5'
19049 3' -53.7 NC_004684.1 + 64447 0.66 0.827072
Target:  5'- --cGCGCCgaugGCcUCGGuGCUCGGCa -3'
miRNA:   3'- guuCGCGGaca-UGuAGCC-UGAGUCGg -5'
19049 3' -53.7 NC_004684.1 + 64012 0.72 0.499561
Target:  5'- cCAGGCGCUUGccGCGcuugaccUCGGugUCGGCg -3'
miRNA:   3'- -GUUCGCGGACa-UGU-------AGCCugAGUCGg -5'
19049 3' -53.7 NC_004684.1 + 63516 0.67 0.798
Target:  5'- aGGGCgGCCUGgcgucGCAgcucgCGGgcguggcGCUCGGCCu -3'
miRNA:   3'- gUUCG-CGGACa----UGUa----GCC-------UGAGUCGG- -5'
19049 3' -53.7 NC_004684.1 + 62830 0.67 0.759102
Target:  5'- -cAGCGCCUcgaugGCcUCGGcaaUCAGCCa -3'
miRNA:   3'- guUCGCGGAca---UGuAGCCug-AGUCGG- -5'
19049 3' -53.7 NC_004684.1 + 62391 0.69 0.684786
Target:  5'- aCAGGUccaccuucGCCcgGUACGUcgCGGAgUCGGCCu -3'
miRNA:   3'- -GUUCG--------CGGa-CAUGUA--GCCUgAGUCGG- -5'
19049 3' -53.7 NC_004684.1 + 61693 0.66 0.836045
Target:  5'- -uGGCGUCgGUGCcgUGGGCa-GGCCg -3'
miRNA:   3'- guUCGCGGaCAUGuaGCCUGagUCGG- -5'
19049 3' -53.7 NC_004684.1 + 61402 0.67 0.769291
Target:  5'- --uGCGCCUGaGCcaggcCGGgacuucGCUCGGCCg -3'
miRNA:   3'- guuCGCGGACaUGua---GCC------UGAGUCGG- -5'
19049 3' -53.7 NC_004684.1 + 60970 0.66 0.853338
Target:  5'- --cGUGgCUGgugGCGUCGGcCUCGGUg -3'
miRNA:   3'- guuCGCgGACa--UGUAGCCuGAGUCGg -5'
19049 3' -53.7 NC_004684.1 + 60822 0.7 0.586064
Target:  5'- cCAGGUGCCgg-ACA-CGGACUCA-CCg -3'
miRNA:   3'- -GUUCGCGGacaUGUaGCCUGAGUcGG- -5'
19049 3' -53.7 NC_004684.1 + 59917 0.68 0.748784
Target:  5'- -cGGCcCUUGUcaGCGUCGGugUcCGGCCc -3'
miRNA:   3'- guUCGcGGACA--UGUAGCCugA-GUCGG- -5'
19049 3' -53.7 NC_004684.1 + 58778 0.72 0.480052
Target:  5'- -cGGUGCCgGUGCAcCGGGCUUguucgaGGCCa -3'
miRNA:   3'- guUCGCGGaCAUGUaGCCUGAG------UCGG- -5'
19049 3' -53.7 NC_004684.1 + 58100 0.69 0.695644
Target:  5'- -uAGCGCCaccGUcgGCGUCGGGaacucgacaUCGGCCa -3'
miRNA:   3'- guUCGCGGa--CA--UGUAGCCUg--------AGUCGG- -5'
19049 3' -53.7 NC_004684.1 + 57190 0.71 0.553514
Target:  5'- gCAGGCggGCCUGgaagGCggCGGcgcgaugguGCUCAGCCu -3'
miRNA:   3'- -GUUCG--CGGACa---UGuaGCC---------UGAGUCGG- -5'
19049 3' -53.7 NC_004684.1 + 56882 0.69 0.695644
Target:  5'- --uGCGCCUGacCGUCGGcggcccaguGCgUCGGCCg -3'
miRNA:   3'- guuCGCGGACauGUAGCC---------UG-AGUCGG- -5'
19049 3' -53.7 NC_004684.1 + 54844 0.7 0.640961
Target:  5'- gCGAGCGCCUGgagcgcgucgAUGUCGGugggCAGCUc -3'
miRNA:   3'- -GUUCGCGGACa---------UGUAGCCuga-GUCGG- -5'
19049 3' -53.7 NC_004684.1 + 54527 0.66 0.844803
Target:  5'- -cGGCgGCCUcgGCGguggCGGcCUCGGCCu -3'
miRNA:   3'- guUCG-CGGAcaUGUa---GCCuGAGUCGG- -5'
19049 3' -53.7 NC_004684.1 + 53680 0.66 0.853338
Target:  5'- -cAGCGCCUGg--GUCGGGaugaucUUCGGCg -3'
miRNA:   3'- guUCGCGGACaugUAGCCU------GAGUCGg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.