miRNA display CGI


Results 1 - 20 of 71 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
19049 3' -53.7 NC_004684.1 + 27541 1.13 0.000992
Target:  5'- cCAAGCGCCUGUACAUCGGACUCAGCCa -3'
miRNA:   3'- -GUUCGCGGACAUGUAGCCUGAGUCGG- -5'
19049 3' -53.7 NC_004684.1 + 62830 0.67 0.759102
Target:  5'- -cAGCGCCUcgaugGCcUCGGcaaUCAGCCa -3'
miRNA:   3'- guUCGCGGAca---UGuAGCCug-AGUCGG- -5'
19049 3' -53.7 NC_004684.1 + 36290 0.67 0.769291
Target:  5'- -cAGCGCCUGcgcgGCGUCcuGC-CAGCCc -3'
miRNA:   3'- guUCGCGGACa---UGUAGccUGaGUCGG- -5'
19049 3' -53.7 NC_004684.1 + 53680 0.66 0.853338
Target:  5'- -cAGCGCCUGg--GUCGGGaugaucUUCGGCg -3'
miRNA:   3'- guUCGCGGACaugUAGCCU------GAGUCGg -5'
19049 3' -53.7 NC_004684.1 + 21097 0.71 0.553514
Target:  5'- cCAAGCGCC---GCAaCGcGCUCGGCCg -3'
miRNA:   3'- -GUUCGCGGacaUGUaGCcUGAGUCGG- -5'
19049 3' -53.7 NC_004684.1 + 54844 0.7 0.640961
Target:  5'- gCGAGCGCCUGgagcgcgucgAUGUCGGugggCAGCUc -3'
miRNA:   3'- -GUUCGCGGACa---------UGUAGCCuga-GUCGG- -5'
19049 3' -53.7 NC_004684.1 + 16458 0.69 0.651955
Target:  5'- --uGCGCCUGgACGaggcCGGGCUgucCGGCCa -3'
miRNA:   3'- guuCGCGGACaUGUa---GCCUGA---GUCGG- -5'
19049 3' -53.7 NC_004684.1 + 34293 0.69 0.662931
Target:  5'- gCGAGCGCCU--GCGUCGGcagcGC-CAcGCCg -3'
miRNA:   3'- -GUUCGCGGAcaUGUAGCC----UGaGU-CGG- -5'
19049 3' -53.7 NC_004684.1 + 58100 0.69 0.695644
Target:  5'- -uAGCGCCaccGUcgGCGUCGGGaacucgacaUCGGCCa -3'
miRNA:   3'- guUCGCGGa--CA--UGUAGCCUg--------AGUCGG- -5'
19049 3' -53.7 NC_004684.1 + 35424 0.68 0.752926
Target:  5'- -cAGCGCggagguggugaucggCUG-GCGUCGGAUUgCGGCCa -3'
miRNA:   3'- guUCGCG---------------GACaUGUAGCCUGA-GUCGG- -5'
19049 3' -53.7 NC_004684.1 + 66727 0.68 0.727803
Target:  5'- uCAGGCGCacgCUGUcgugcGCGUCGGugUCcuuggGGUCg -3'
miRNA:   3'- -GUUCGCG---GACA-----UGUAGCCugAG-----UCGG- -5'
19049 3' -53.7 NC_004684.1 + 56882 0.69 0.695644
Target:  5'- --uGCGCCUGacCGUCGGcggcccaguGCgUCGGCCg -3'
miRNA:   3'- guuCGCGGACauGUAGCC---------UG-AGUCGG- -5'
19049 3' -53.7 NC_004684.1 + 66646 0.72 0.469935
Target:  5'- gGAGCGCCgccaggGCGUCGGugUC-GUCg -3'
miRNA:   3'- gUUCGCGGaca---UGUAGCCugAGuCGG- -5'
19049 3' -53.7 NC_004684.1 + 52102 0.68 0.727803
Target:  5'- --cGCGCCaGccaaACGUCGGGCUggUGGCCa -3'
miRNA:   3'- guuCGCGGaCa---UGUAGCCUGA--GUCGG- -5'
19049 3' -53.7 NC_004684.1 + 58778 0.72 0.480052
Target:  5'- -cGGUGCCgGUGCAcCGGGCUUguucgaGGCCa -3'
miRNA:   3'- guUCGCGGaCAUGUaGCCUGAG------UCGG- -5'
19049 3' -53.7 NC_004684.1 + 62391 0.69 0.684786
Target:  5'- aCAGGUccaccuucGCCcgGUACGUcgCGGAgUCGGCCu -3'
miRNA:   3'- -GUUCG--------CGGa-CAUGUA--GCCUgAGUCGG- -5'
19049 3' -53.7 NC_004684.1 + 11443 0.68 0.748784
Target:  5'- gGAGCGCg---GCGUCGGcgUCGGCCu -3'
miRNA:   3'- gUUCGCGgacaUGUAGCCugAGUCGG- -5'
19049 3' -53.7 NC_004684.1 + 61402 0.67 0.769291
Target:  5'- --uGCGCCUGaGCcaggcCGGgacuucGCUCGGCCg -3'
miRNA:   3'- guuCGCGGACaUGua---GCC------UGAGUCGG- -5'
19049 3' -53.7 NC_004684.1 + 51115 0.72 0.490275
Target:  5'- gAAGCGCC---GCGUCGGGCcCGGCg -3'
miRNA:   3'- gUUCGCGGacaUGUAGCCUGaGUCGg -5'
19049 3' -53.7 NC_004684.1 + 8090 0.69 0.651955
Target:  5'- gGAGCGCCcGUgaGCAagGGGCaaCGGCCu -3'
miRNA:   3'- gUUCGCGGaCA--UGUagCCUGa-GUCGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.