miRNA display CGI


Results 1 - 20 of 55 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
19049 5' -56.7 NC_004684.1 + 65327 0.67 0.54957
Target:  5'- -cGGCC-AGCGCCaGgcagGCCACgAUGGc -3'
miRNA:   3'- uaCCGGuUCGUGGaCa---CGGUG-UACCu -5'
19049 5' -56.7 NC_004684.1 + 62503 0.67 0.549571
Target:  5'- gGUGGCgacCAGGcCGCCUGaGCCGCcuucaAUGGAc -3'
miRNA:   3'- -UACCG---GUUC-GUGGACaCGGUG-----UACCU- -5'
19049 5' -56.7 NC_004684.1 + 61081 0.71 0.329996
Target:  5'- -cGGCCAAGUACg---GCCugGUGGAc -3'
miRNA:   3'- uaCCGGUUCGUGgacaCGGugUACCU- -5'
19049 5' -56.7 NC_004684.1 + 60705 0.73 0.277273
Target:  5'- gGUGGCCAGGUcgACCUGUgcagGCCACucccGUGGc -3'
miRNA:   3'- -UACCGGUUCG--UGGACA----CGGUG----UACCu -5'
19049 5' -56.7 NC_004684.1 + 58719 0.76 0.154654
Target:  5'- -cGGCCAcaGGCACCUG-GCCGCAccGGGc -3'
miRNA:   3'- uaCCGGU--UCGUGGACaCGGUGUa-CCU- -5'
19049 5' -56.7 NC_004684.1 + 58622 0.69 0.456158
Target:  5'- -cGGCCcguGGCGgCUgGUGCCGCGcUGGGc -3'
miRNA:   3'- uaCCGGu--UCGUgGA-CACGGUGU-ACCU- -5'
19049 5' -56.7 NC_004684.1 + 57306 0.67 0.571212
Target:  5'- uGUGGCUGAGCACCcGgcgcaCCACggGGGu -3'
miRNA:   3'- -UACCGGUUCGUGGaCac---GGUGuaCCU- -5'
19049 5' -56.7 NC_004684.1 + 53409 0.72 0.314211
Target:  5'- gGUGGCCGGGCugGCCUGcGCCGCGc--- -3'
miRNA:   3'- -UACCGGUUCG--UGGACaCGGUGUaccu -5'
19049 5' -56.7 NC_004684.1 + 52876 0.68 0.486427
Target:  5'- -aGGCCAGGguCACCgucacGUGCCACcgGcGAc -3'
miRNA:   3'- uaCCGGUUC--GUGGa----CACGGUGuaC-CU- -5'
19049 5' -56.7 NC_004684.1 + 51170 0.7 0.41744
Target:  5'- uGUGGCCGAuGCGCCgg-GCCA--UGGAc -3'
miRNA:   3'- -UACCGGUU-CGUGGacaCGGUguACCU- -5'
19049 5' -56.7 NC_004684.1 + 50544 0.66 0.637055
Target:  5'- cAUGGCUGAGUugGCCUuucGUGgUugGUGGAg -3'
miRNA:   3'- -UACCGGUUCG--UGGA---CACgGugUACCU- -5'
19049 5' -56.7 NC_004684.1 + 48447 0.71 0.346357
Target:  5'- cUGGCCAuccuGCGCC---GCUACAUGGAc -3'
miRNA:   3'- uACCGGUu---CGUGGacaCGGUGUACCU- -5'
19049 5' -56.7 NC_004684.1 + 46116 0.66 0.604026
Target:  5'- -cGGCCGGGCGCgC-GUGCCgGgGUGGu -3'
miRNA:   3'- uaCCGGUUCGUG-GaCACGG-UgUACCu -5'
19049 5' -56.7 NC_004684.1 + 45693 0.68 0.507126
Target:  5'- -aGGCCGAGCcaugACCacgGUGUCGCAcaucgGGAa -3'
miRNA:   3'- uaCCGGUUCG----UGGa--CACGGUGUa----CCU- -5'
19049 5' -56.7 NC_004684.1 + 44692 0.68 0.486427
Target:  5'- uUGGCCAcGU-CCUGcGCCGCcgGGGc -3'
miRNA:   3'- uACCGGUuCGuGGACaCGGUGuaCCU- -5'
19049 5' -56.7 NC_004684.1 + 41791 0.67 0.54957
Target:  5'- -cGGCCAGGUGCCgacGCCGacguucuuCGUGGAc -3'
miRNA:   3'- uaCCGGUUCGUGGacaCGGU--------GUACCU- -5'
19049 5' -56.7 NC_004684.1 + 39145 0.66 0.626037
Target:  5'- cUGGCCGGGUccaccGCgCUGUGCUccGgGUGGGc -3'
miRNA:   3'- uACCGGUUCG-----UG-GACACGG--UgUACCU- -5'
19049 5' -56.7 NC_004684.1 + 37732 0.74 0.225496
Target:  5'- -aGGUgGAGCGCCUGcucguugGCCAgAUGGAa -3'
miRNA:   3'- uaCCGgUUCGUGGACa------CGGUgUACCU- -5'
19049 5' -56.7 NC_004684.1 + 37659 0.69 0.446295
Target:  5'- -cGGUCAGGCAUCgacccgGUgcGCCAgGUGGAu -3'
miRNA:   3'- uaCCGGUUCGUGGa-----CA--CGGUgUACCU- -5'
19049 5' -56.7 NC_004684.1 + 36910 0.66 0.626037
Target:  5'- cUGGCCGguGGCAUCgcccgGUcgagGCCGgGUGGAc -3'
miRNA:   3'- uACCGGU--UCGUGGa----CA----CGGUgUACCU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.