miRNA display CGI


Results 1 - 20 of 47 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
19050 5' -55 NC_004684.1 + 41613 0.65 0.798939
Target:  5'- cACCGgCGUGccGCCGguGGAgccGGACGcCAg -3'
miRNA:   3'- -UGGCgGUAU--UGGUguCCU---CCUGCaGU- -5'
19050 5' -55 NC_004684.1 + 557 0.65 0.798939
Target:  5'- gGCCGCC---ACCG-AGGAGGACa--- -3'
miRNA:   3'- -UGGCGGuauUGGUgUCCUCCUGcagu -5'
19050 5' -55 NC_004684.1 + 14577 0.65 0.798939
Target:  5'- -gCGCCGgGGCCACcgAGGAGGAgCG-CGa -3'
miRNA:   3'- ugGCGGUaUUGGUG--UCCUCCU-GCaGU- -5'
19050 5' -55 NC_004684.1 + 18132 0.65 0.798939
Target:  5'- cACCGCCAacaUGgacgcGCCGCuguGGGGcGACGUg- -3'
miRNA:   3'- -UGGCGGU---AU-----UGGUGu--CCUC-CUGCAgu -5'
19050 5' -55 NC_004684.1 + 44181 0.65 0.797982
Target:  5'- cCCGCCGUcGCCACcGGcggccuuGGuGAUGUCGg -3'
miRNA:   3'- uGGCGGUAuUGGUGuCC-------UC-CUGCAGU- -5'
19050 5' -55 NC_004684.1 + 34520 0.66 0.790263
Target:  5'- cACCGCCc--ACCACccgaucucaugcucuGGAGGgaGCGUCGg -3'
miRNA:   3'- -UGGCGGuauUGGUGu--------------CCUCC--UGCAGU- -5'
19050 5' -55 NC_004684.1 + 11417 0.66 0.789291
Target:  5'- uUCGCCGUAGacgccgaugacCCGCuGGAGcgcGGCGUCGg -3'
miRNA:   3'- uGGCGGUAUU-----------GGUGuCCUC---CUGCAGU- -5'
19050 5' -55 NC_004684.1 + 63753 0.66 0.789291
Target:  5'- gACCGgCAUGACC-CAGGuGGcGCGcuUCGg -3'
miRNA:   3'- -UGGCgGUAUUGGuGUCCuCC-UGC--AGU- -5'
19050 5' -55 NC_004684.1 + 29326 0.66 0.779483
Target:  5'- gUCGCCGUugagcuucuuGGCCuCGGG-GGugGUCGg -3'
miRNA:   3'- uGGCGGUA----------UUGGuGUCCuCCugCAGU- -5'
19050 5' -55 NC_004684.1 + 24653 0.66 0.76852
Target:  5'- gGCCGCCA--ACCACGuccuGGAcaugcuucacaccGGAgGUCAc -3'
miRNA:   3'- -UGGCGGUauUGGUGU----CCU-------------CCUgCAGU- -5'
19050 5' -55 NC_004684.1 + 6058 0.66 0.759426
Target:  5'- gGCCGCCAccuacGCCGCc-GAGGGCGgCGg -3'
miRNA:   3'- -UGGCGGUau---UGGUGucCUCCUGCaGU- -5'
19050 5' -55 NC_004684.1 + 12412 0.66 0.749201
Target:  5'- gUCGCCGUuuaguguucGACCGCAGaGAGcGACcGUCu -3'
miRNA:   3'- uGGCGGUA---------UUGGUGUC-CUC-CUG-CAGu -5'
19050 5' -55 NC_004684.1 + 63319 0.66 0.749201
Target:  5'- gGCCGuuCCAguugAACC--GGGAGGugGUCu -3'
miRNA:   3'- -UGGC--GGUa---UUGGugUCCUCCugCAGu -5'
19050 5' -55 NC_004684.1 + 8838 0.66 0.749201
Target:  5'- cAUCGCCcgacUGGCCAUGGGccuGGACGUg- -3'
miRNA:   3'- -UGGCGGu---AUUGGUGUCCu--CCUGCAgu -5'
19050 5' -55 NC_004684.1 + 21556 0.66 0.749201
Target:  5'- aGCgCGgCAUGACCGCc-GAGGcCGUCAc -3'
miRNA:   3'- -UG-GCgGUAUUGGUGucCUCCuGCAGU- -5'
19050 5' -55 NC_004684.1 + 20472 0.67 0.738858
Target:  5'- cACCGCCGuUGGCCGgucCuGGGGGAUG-CGg -3'
miRNA:   3'- -UGGCGGU-AUUGGU---GuCCUCCUGCaGU- -5'
19050 5' -55 NC_004684.1 + 52240 0.67 0.72841
Target:  5'- gGCCGUgGU-GCCACAGcGGcGGuACGUCGa -3'
miRNA:   3'- -UGGCGgUAuUGGUGUC-CU-CC-UGCAGU- -5'
19050 5' -55 NC_004684.1 + 45694 0.67 0.717867
Target:  5'- gGCCgaGCCAUGACCACGGuGucgcacaucGGGAaGUCGg -3'
miRNA:   3'- -UGG--CGGUAUUGGUGUC-C---------UCCUgCAGU- -5'
19050 5' -55 NC_004684.1 + 67198 0.67 0.717867
Target:  5'- cGuuGCCAgGGCCACcuuGGuGGugGUCc -3'
miRNA:   3'- -UggCGGUaUUGGUGu--CCuCCugCAGu -5'
19050 5' -55 NC_004684.1 + 34200 0.67 0.717867
Target:  5'- gUCGCCAUGGCCACGGuGAcGACcuugccgagGUCGa -3'
miRNA:   3'- uGGCGGUAUUGGUGUC-CUcCUG---------CAGU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.