Results 1 - 20 of 47 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
19050 | 5' | -55 | NC_004684.1 | + | 67198 | 0.67 | 0.717867 |
Target: 5'- cGuuGCCAgGGCCACcuuGGuGGugGUCc -3' miRNA: 3'- -UggCGGUaUUGGUGu--CCuCCugCAGu -5' |
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19050 | 5' | -55 | NC_004684.1 | + | 65581 | 0.68 | 0.630349 |
Target: 5'- aGCCGCCAUGgccucggucaugaGCCGCAcGGcGG-CGUCc -3' miRNA: 3'- -UGGCGGUAU-------------UGGUGU-CCuCCuGCAGu -5' |
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19050 | 5' | -55 | NC_004684.1 | + | 63753 | 0.66 | 0.789291 |
Target: 5'- gACCGgCAUGACC-CAGGuGGcGCGcuUCGg -3' miRNA: 3'- -UGGCgGUAUUGGuGUCCuCC-UGC--AGU- -5' |
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19050 | 5' | -55 | NC_004684.1 | + | 63319 | 0.66 | 0.749201 |
Target: 5'- gGCCGuuCCAguugAACC--GGGAGGugGUCu -3' miRNA: 3'- -UGGC--GGUa---UUGGugUCCUCCugCAGu -5' |
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19050 | 5' | -55 | NC_004684.1 | + | 62455 | 0.68 | 0.685784 |
Target: 5'- cCUGCCAgcGCUcCGGGAGGugGcCGu -3' miRNA: 3'- uGGCGGUauUGGuGUCCUCCugCaGU- -5' |
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19050 | 5' | -55 | NC_004684.1 | + | 55560 | 0.68 | 0.642347 |
Target: 5'- gGCCGCCGUGGCC-CGGuGGccGGGgGUCc -3' miRNA: 3'- -UGGCGGUAUUGGuGUC-CU--CCUgCAGu -5' |
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19050 | 5' | -55 | NC_004684.1 | + | 54983 | 0.68 | 0.642347 |
Target: 5'- gGCCGCCG--ACCACAGc-GGACGg-- -3' miRNA: 3'- -UGGCGGUauUGGUGUCcuCCUGCagu -5' |
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19050 | 5' | -55 | NC_004684.1 | + | 54639 | 0.68 | 0.642347 |
Target: 5'- aGCCGCgcgGGCCAa--GAGGGCGUCGa -3' miRNA: 3'- -UGGCGguaUUGGUgucCUCCUGCAGU- -5' |
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19050 | 5' | -55 | NC_004684.1 | + | 54278 | 0.69 | 0.598759 |
Target: 5'- aGCUGCCGcgcUGGCCGguGGGGcGGCGUgCAc -3' miRNA: 3'- -UGGCGGU---AUUGGUguCCUC-CUGCA-GU- -5' |
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19050 | 5' | -55 | NC_004684.1 | + | 52240 | 0.67 | 0.72841 |
Target: 5'- gGCCGUgGU-GCCACAGcGGcGGuACGUCGa -3' miRNA: 3'- -UGGCGgUAuUGGUGUC-CU-CC-UGCAGU- -5' |
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19050 | 5' | -55 | NC_004684.1 | + | 49089 | 0.71 | 0.482647 |
Target: 5'- cGCCGCCAaccggcagguGCCACAGGucGcCGUCGg -3' miRNA: 3'- -UGGCGGUau--------UGGUGUCCucCuGCAGU- -5' |
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19050 | 5' | -55 | NC_004684.1 | + | 45694 | 0.67 | 0.717867 |
Target: 5'- gGCCgaGCCAUGACCACGGuGucgcacaucGGGAaGUCGg -3' miRNA: 3'- -UGG--CGGUAUUGGUGUC-C---------UCCUgCAGU- -5' |
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19050 | 5' | -55 | NC_004684.1 | + | 44181 | 0.65 | 0.797982 |
Target: 5'- cCCGCCGUcGCCACcGGcggccuuGGuGAUGUCGg -3' miRNA: 3'- uGGCGGUAuUGGUGuCC-------UC-CUGCAGU- -5' |
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19050 | 5' | -55 | NC_004684.1 | + | 42649 | 0.71 | 0.472589 |
Target: 5'- uGCCGCCAgcgaugAGCgCGguGGAGGGCaUCAc -3' miRNA: 3'- -UGGCGGUa-----UUG-GUguCCUCCUGcAGU- -5' |
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19050 | 5' | -55 | NC_004684.1 | + | 42049 | 0.76 | 0.249707 |
Target: 5'- cGCCGCCAaGGCCACcgGGGAGGcCGcCAu -3' miRNA: 3'- -UGGCGGUaUUGGUG--UCCUCCuGCaGU- -5' |
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19050 | 5' | -55 | NC_004684.1 | + | 41613 | 0.65 | 0.798939 |
Target: 5'- cACCGgCGUGccGCCGguGGAgccGGACGcCAg -3' miRNA: 3'- -UGGCgGUAU--UGGUguCCU---CCUGCaGU- -5' |
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19050 | 5' | -55 | NC_004684.1 | + | 36450 | 0.67 | 0.696543 |
Target: 5'- uGCUGgCGUGACCAU-GGuGGACGUgAg -3' miRNA: 3'- -UGGCgGUAUUGGUGuCCuCCUGCAgU- -5' |
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19050 | 5' | -55 | NC_004684.1 | + | 35413 | 0.7 | 0.566328 |
Target: 5'- aGCCGCCGagGAgCGCGGGAGG-CGa-- -3' miRNA: 3'- -UGGCGGUa-UUgGUGUCCUCCuGCagu -5' |
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19050 | 5' | -55 | NC_004684.1 | + | 34520 | 0.66 | 0.790263 |
Target: 5'- cACCGCCc--ACCACccgaucucaugcucuGGAGGgaGCGUCGg -3' miRNA: 3'- -UGGCGGuauUGGUGu--------------CCUCC--UGCAGU- -5' |
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19050 | 5' | -55 | NC_004684.1 | + | 34200 | 0.67 | 0.717867 |
Target: 5'- gUCGCCAUGGCCACGGuGAcGACcuugccgagGUCGa -3' miRNA: 3'- uGGCGGUAUUGGUGUC-CUcCUG---------CAGU- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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