miRNA display CGI


Results 1 - 20 of 173 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
19066 3' -61.8 NC_004684.1 + 22794 0.66 0.438905
Target:  5'- gUGGCUG-GcGACUucaacacgcugguCGACCGgcaguUCCCGGCg -3'
miRNA:   3'- gACCGGCaC-CUGG-------------GCUGGU-----AGGGCCG- -5'
19066 3' -61.8 NC_004684.1 + 9346 0.66 0.430775
Target:  5'- -aGGCCu----CCgGugCGUCCCGGCg -3'
miRNA:   3'- gaCCGGcaccuGGgCugGUAGGGCCG- -5'
19066 3' -61.8 NC_004684.1 + 1240 0.66 0.430775
Target:  5'- cCUGGUCGgucGCCCGGC---CCCGGCc -3'
miRNA:   3'- -GACCGGCaccUGGGCUGguaGGGCCG- -5'
19066 3' -61.8 NC_004684.1 + 27120 0.66 0.439814
Target:  5'- gCUGGCCGUugccgGGACgCUGAUCGacgugCUgGGCg -3'
miRNA:   3'- -GACCGGCA-----CCUG-GGCUGGUa----GGgCCG- -5'
19066 3' -61.8 NC_004684.1 + 27348 0.66 0.448959
Target:  5'- --cGCCGUGGGCaCCGGCaugaugCCCaaGGCc -3'
miRNA:   3'- gacCGGCACCUG-GGCUGgua---GGG--CCG- -5'
19066 3' -61.8 NC_004684.1 + 40718 0.66 0.430775
Target:  5'- gUGGCCG-GGA--CGACCAgCgCGGCg -3'
miRNA:   3'- gACCGGCaCCUggGCUGGUaGgGCCG- -5'
19066 3' -61.8 NC_004684.1 + 9802 0.66 0.486548
Target:  5'- cCUGcGCCgGUGGcACCCGACgcUCaaGGCc -3'
miRNA:   3'- -GAC-CGG-CACC-UGGGCUGguAGggCCG- -5'
19066 3' -61.8 NC_004684.1 + 26963 0.66 0.467559
Target:  5'- -aGGCgGUGGccaACgCCG-CCAUCCaGGCc -3'
miRNA:   3'- gaCCGgCACC---UG-GGCuGGUAGGgCCG- -5'
19066 3' -61.8 NC_004684.1 + 60275 0.66 0.486548
Target:  5'- -cGGCgGUGGcgguuGCgUGGCCcgGUCCuCGGCg -3'
miRNA:   3'- gaCCGgCACC-----UGgGCUGG--UAGG-GCCG- -5'
19066 3' -61.8 NC_004684.1 + 47358 0.66 0.448959
Target:  5'- -aGGCCacgGUaGGACCCGGCgGUagUGGCg -3'
miRNA:   3'- gaCCGG---CA-CCUGGGCUGgUAggGCCG- -5'
19066 3' -61.8 NC_004684.1 + 58402 0.66 0.467559
Target:  5'- -aGGCCuUGG-CCCGGCCG--CCGGa -3'
miRNA:   3'- gaCCGGcACCuGGGCUGGUagGGCCg -5'
19066 3' -61.8 NC_004684.1 + 381 0.66 0.464744
Target:  5'- cCUGGCCGa-GACCgaCGGCCccgcguacggggaaAUCCUGGUg -3'
miRNA:   3'- -GACCGGCacCUGG--GCUGG--------------UAGGGCCG- -5'
19066 3' -61.8 NC_004684.1 + 11382 0.66 0.448959
Target:  5'- gUGGCguccauCGUGGccucguucACgCCGACCAccuaCCCGGCc -3'
miRNA:   3'- gACCG------GCACC--------UG-GGCUGGUa---GGGCCG- -5'
19066 3' -61.8 NC_004684.1 + 1068 0.66 0.477007
Target:  5'- gCUGGCUGgcggcgcUGGACgUGAUCGgugaccaggccgcgaCCCGGCg -3'
miRNA:   3'- -GACCGGC-------ACCUGgGCUGGUa--------------GGGCCG- -5'
19066 3' -61.8 NC_004684.1 + 30058 0.66 0.448959
Target:  5'- gUGaGCC-UGGuaCCGGCC-UCCCGGCc -3'
miRNA:   3'- gAC-CGGcACCugGGCUGGuAGGGCCG- -5'
19066 3' -61.8 NC_004684.1 + 38824 0.66 0.430775
Target:  5'- cCUGGCgGU--GCCCGACgG-CCUGGUg -3'
miRNA:   3'- -GACCGgCAccUGGGCUGgUaGGGCCG- -5'
19066 3' -61.8 NC_004684.1 + 46324 0.66 0.486548
Target:  5'- -cGGCCcaGGuGCCCGGUCAgcaCCGGCa -3'
miRNA:   3'- gaCCGGcaCC-UGGGCUGGUag-GGCCG- -5'
19066 3' -61.8 NC_004684.1 + 11168 0.66 0.448959
Target:  5'- cCUGGCCGccagcgagUGGGucaugaCCGACCGggacgagaaCCCGGUu -3'
miRNA:   3'- -GACCGGC--------ACCUg-----GGCUGGUa--------GGGCCG- -5'
19066 3' -61.8 NC_004684.1 + 43899 0.66 0.486548
Target:  5'- -gGGCagGUGGAUgacaCGGCCAucUCCUGGUu -3'
miRNA:   3'- gaCCGg-CACCUGg---GCUGGU--AGGGCCG- -5'
19066 3' -61.8 NC_004684.1 + 62626 0.66 0.430775
Target:  5'- -gGaGCCGUGGcGCuuGAUCAggUCgCGGCa -3'
miRNA:   3'- gaC-CGGCACC-UGggCUGGU--AGgGCCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.