miRNA display CGI


Results 1 - 20 of 173 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
19066 3' -61.8 NC_004684.1 + 381 0.66 0.464744
Target:  5'- cCUGGCCGa-GACCgaCGGCCccgcguacggggaaAUCCUGGUg -3'
miRNA:   3'- -GACCGGCacCUGG--GCUGG--------------UAGGGCCG- -5'
19066 3' -61.8 NC_004684.1 + 463 0.73 0.176647
Target:  5'- gUGGCCGUGGAcaaCCgGGCCAgcgaggUCGGCa -3'
miRNA:   3'- gACCGGCACCU---GGgCUGGUag----GGCCG- -5'
19066 3' -61.8 NC_004684.1 + 531 0.7 0.281755
Target:  5'- -aGGCC-UGGACCCGGCgAaaggCCUGGa -3'
miRNA:   3'- gaCCGGcACCUGGGCUGgUa---GGGCCg -5'
19066 3' -61.8 NC_004684.1 + 1068 0.66 0.477007
Target:  5'- gCUGGCUGgcggcgcUGGACgUGAUCGgugaccaggccgcgaCCCGGCg -3'
miRNA:   3'- -GACCGGC-------ACCUGgGCUGGUa--------------GGGCCG- -5'
19066 3' -61.8 NC_004684.1 + 1240 0.66 0.430775
Target:  5'- cCUGGUCGgucGCCCGGC---CCCGGCc -3'
miRNA:   3'- -GACCGGCaccUGGGCUGguaGGGCCG- -5'
19066 3' -61.8 NC_004684.1 + 1460 0.7 0.262339
Target:  5'- cCUGGUCGa-GACCgGGCCGgacgugCCCGGUg -3'
miRNA:   3'- -GACCGGCacCUGGgCUGGUa-----GGGCCG- -5'
19066 3' -61.8 NC_004684.1 + 2045 0.67 0.378931
Target:  5'- gUGGCCcugGGGgCCG-CCAUCgUGGCc -3'
miRNA:   3'- gACCGGca-CCUgGGCuGGUAGgGCCG- -5'
19066 3' -61.8 NC_004684.1 + 2080 0.67 0.378931
Target:  5'- gCUGGCCGUGGugCacagcgaGGCCgccgucgcGUUCUGGg -3'
miRNA:   3'- -GACCGGCACCugGg------CUGG--------UAGGGCCg -5'
19066 3' -61.8 NC_004684.1 + 2667 0.68 0.33144
Target:  5'- -cGGCCacaagaUGGACCCGAUgGaggcCCUGGCg -3'
miRNA:   3'- gaCCGGc-----ACCUGGGCUGgUa---GGGCCG- -5'
19066 3' -61.8 NC_004684.1 + 3650 0.67 0.412155
Target:  5'- gUGGCCGcccGGugCCGGgucaUCGUacgguggCCCGGCa -3'
miRNA:   3'- gACCGGCa--CCugGGCU----GGUA-------GGGCCG- -5'
19066 3' -61.8 NC_004684.1 + 3826 0.67 0.421847
Target:  5'- -aGGCCGaUGGACCUGAUgG-CagCGGCc -3'
miRNA:   3'- gaCCGGC-ACCUGGGCUGgUaGg-GCCG- -5'
19066 3' -61.8 NC_004684.1 + 4039 0.67 0.387277
Target:  5'- aUGGCgacgGUGGccuaCCGGCCAUCgCCGGg -3'
miRNA:   3'- gACCGg---CACCug--GGCUGGUAG-GGCCg -5'
19066 3' -61.8 NC_004684.1 + 4140 0.75 0.126327
Target:  5'- aUGGUCGUGGACaagcugcucgggCCGACg--CCCGGCa -3'
miRNA:   3'- gACCGGCACCUG------------GGCUGguaGGGCCG- -5'
19066 3' -61.8 NC_004684.1 + 4154 0.72 0.20542
Target:  5'- -cGGacaCCGUGGACgCGAUCAUggcccgguugcgCCCGGCg -3'
miRNA:   3'- gaCC---GGCACCUGgGCUGGUA------------GGGCCG- -5'
19066 3' -61.8 NC_004684.1 + 4188 0.67 0.41303
Target:  5'- gUGGCCGagaagaugGGGCCguuCGGCCGcgucgagucgaCCCGGCg -3'
miRNA:   3'- gACCGGCa-------CCUGG---GCUGGUa----------GGGCCG- -5'
19066 3' -61.8 NC_004684.1 + 4485 0.71 0.226788
Target:  5'- -cGGCCa-GGGCCUGGCCcgCCgUGGCa -3'
miRNA:   3'- gaCCGGcaCCUGGGCUGGuaGG-GCCG- -5'
19066 3' -61.8 NC_004684.1 + 4510 0.75 0.113732
Target:  5'- gCUGGCggccacCGUGGACCCGGgguucaacaUCAcCCCGGCg -3'
miRNA:   3'- -GACCG------GCACCUGGGCU---------GGUaGGGCCG- -5'
19066 3' -61.8 NC_004684.1 + 5686 0.82 0.039688
Target:  5'- gUGGCCG-GGGCCCGGCCugcCCaCGGCa -3'
miRNA:   3'- gACCGGCaCCUGGGCUGGua-GG-GCCG- -5'
19066 3' -61.8 NC_004684.1 + 5958 0.71 0.221275
Target:  5'- cCUGGCCGcgccGGugagcgaCCGGCCGagcaagUCCCGGCc -3'
miRNA:   3'- -GACCGGCa---CCug-----GGCUGGU------AGGGCCG- -5'
19066 3' -61.8 NC_004684.1 + 6554 0.68 0.346771
Target:  5'- --cGCCGUGGACaUCGACgGUgaguccgugUCCGGCa -3'
miRNA:   3'- gacCGGCACCUG-GGCUGgUA---------GGGCCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.