miRNA display CGI


Results 1 - 20 of 173 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
19066 3' -61.8 NC_004684.1 + 62922 0.71 0.238162
Target:  5'- cCUGGCCG-GuGACgaagCCGACCAgcgCgCGGCg -3'
miRNA:   3'- -GACCGGCaC-CUG----GGCUGGUa--GgGCCG- -5'
19066 3' -61.8 NC_004684.1 + 61700 0.72 0.195404
Target:  5'- -gGuGCCGUGGGCa-GGCCGggcCCCGGCc -3'
miRNA:   3'- gaC-CGGCACCUGggCUGGUa--GGGCCG- -5'
19066 3' -61.8 NC_004684.1 + 25079 0.72 0.195404
Target:  5'- -cGGCaaCGUGG--CCGACC-UCCCGGCa -3'
miRNA:   3'- gaCCG--GCACCugGGCUGGuAGGGCCG- -5'
19066 3' -61.8 NC_004684.1 + 48999 0.72 0.200357
Target:  5'- gCUGGCCG-GG-CCCGACCccgcugaacagAUCggccaCCGGCg -3'
miRNA:   3'- -GACCGGCaCCuGGGCUGG-----------UAG-----GGCCG- -5'
19066 3' -61.8 NC_004684.1 + 4154 0.72 0.20542
Target:  5'- -cGGacaCCGUGGACgCGAUCAUggcccgguugcgCCCGGCg -3'
miRNA:   3'- gaCC---GGCACCUGgGCUGGUA------------GGGCCG- -5'
19066 3' -61.8 NC_004684.1 + 50925 0.72 0.210593
Target:  5'- gUGGCCGgacaGCCCGGCCucGUCCaGGCg -3'
miRNA:   3'- gACCGGCacc-UGGGCUGG--UAGGgCCG- -5'
19066 3' -61.8 NC_004684.1 + 56823 0.72 0.210593
Target:  5'- gUGGCCaucGACCaCGACCA-CCUGGCg -3'
miRNA:   3'- gACCGGcacCUGG-GCUGGUaGGGCCG- -5'
19066 3' -61.8 NC_004684.1 + 5958 0.71 0.221275
Target:  5'- cCUGGCCGcgccGGugagcgaCCGGCCGagcaagUCCCGGCc -3'
miRNA:   3'- -GACCGGCa---CCug-----GGCUGGU------AGGGCCG- -5'
19066 3' -61.8 NC_004684.1 + 24540 0.71 0.238162
Target:  5'- -cGGCgGUGuGCCgGGCCGcgauagcgUCCCGGCc -3'
miRNA:   3'- gaCCGgCACcUGGgCUGGU--------AGGGCCG- -5'
19066 3' -61.8 NC_004684.1 + 56033 0.72 0.185817
Target:  5'- gCUGGCCaccaccGUGGGCCUGgaggccGCCGUCaaGGCg -3'
miRNA:   3'- -GACCGG------CACCUGGGC------UGGUAGggCCG- -5'
19066 3' -61.8 NC_004684.1 + 463 0.73 0.176647
Target:  5'- gUGGCCGUGGAcaaCCgGGCCAgcgaggUCGGCa -3'
miRNA:   3'- gACCGGCACCU---GGgCUGGUag----GGCCG- -5'
19066 3' -61.8 NC_004684.1 + 57982 0.74 0.143886
Target:  5'- gCUGGCCGaGGACauGACCAaggugugCCUGGCg -3'
miRNA:   3'- -GACCGGCaCCUGggCUGGUa------GGGCCG- -5'
19066 3' -61.8 NC_004684.1 + 29353 0.78 0.068455
Target:  5'- -aGGCgGUGGACCUGuCCGUCCCcGCu -3'
miRNA:   3'- gaCCGgCACCUGGGCuGGUAGGGcCG- -5'
19066 3' -61.8 NC_004684.1 + 57839 0.77 0.082433
Target:  5'- gCUGGCCGccGGuACCCGcccgauuGCCAgcgUCCCGGCa -3'
miRNA:   3'- -GACCGGCa-CC-UGGGC-------UGGU---AGGGCCG- -5'
19066 3' -61.8 NC_004684.1 + 46397 0.77 0.082654
Target:  5'- gCUGGCCGggauggucgGGuCCaCGGCCAgcaugUCCCGGCg -3'
miRNA:   3'- -GACCGGCa--------CCuGG-GCUGGU-----AGGGCCG- -5'
19066 3' -61.8 NC_004684.1 + 11624 0.77 0.084899
Target:  5'- gCUGGCCGUcGGccGCCUGACCGUCggcaUCGGCc -3'
miRNA:   3'- -GACCGGCA-CC--UGGGCUGGUAG----GGCCG- -5'
19066 3' -61.8 NC_004684.1 + 30381 0.76 0.105066
Target:  5'- -cGGCgugGUGGACCCcacGCgCAUCCCGGCg -3'
miRNA:   3'- gaCCGg--CACCUGGGc--UG-GUAGGGCCG- -5'
19066 3' -61.8 NC_004684.1 + 12730 0.76 0.110771
Target:  5'- -aGGCCGUGGACCaGGCCGaggucgacgcccUCuuGGCc -3'
miRNA:   3'- gaCCGGCACCUGGgCUGGU------------AGggCCG- -5'
19066 3' -61.8 NC_004684.1 + 4510 0.75 0.113732
Target:  5'- gCUGGCggccacCGUGGACCCGGgguucaacaUCAcCCCGGCg -3'
miRNA:   3'- -GACCG------GCACCUGGGCU---------GGUaGGGCCG- -5'
19066 3' -61.8 NC_004684.1 + 57796 0.75 0.119876
Target:  5'- -gGGCCaagaccugGGaACCCGACCAcggccuggUCCCGGCg -3'
miRNA:   3'- gaCCGGca------CC-UGGGCUGGU--------AGGGCCG- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.