miRNA display CGI


Results 1 - 20 of 173 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
19066 3' -61.8 NC_004684.1 + 20987 1.1 0.000327
Target:  5'- gCUGGCCGUGGACCCGACCAUCCCGGCc -3'
miRNA:   3'- -GACCGGCACCUGGGCUGGUAGGGCCG- -5'
19066 3' -61.8 NC_004684.1 + 5686 0.82 0.039688
Target:  5'- gUGGCCG-GGGCCCGGCCugcCCaCGGCa -3'
miRNA:   3'- gACCGGCaCCUGGGCUGGua-GG-GCCG- -5'
19066 3' -61.8 NC_004684.1 + 67214 0.81 0.041926
Target:  5'- uUGGUgGUGGuCCCGACCAaCCCGGUc -3'
miRNA:   3'- gACCGgCACCuGGGCUGGUaGGGCCG- -5'
19066 3' -61.8 NC_004684.1 + 28250 0.79 0.059782
Target:  5'- -aGcGCgGUGGACCCGGCCAgCCUGGUg -3'
miRNA:   3'- gaC-CGgCACCUGGGCUGGUaGGGCCG- -5'
19066 3' -61.8 NC_004684.1 + 29353 0.78 0.068455
Target:  5'- -aGGCgGUGGACCUGuCCGUCCCcGCu -3'
miRNA:   3'- gaCCGgCACCUGGGCuGGUAGGGcCG- -5'
19066 3' -61.8 NC_004684.1 + 57839 0.77 0.082433
Target:  5'- gCUGGCCGccGGuACCCGcccgauuGCCAgcgUCCCGGCa -3'
miRNA:   3'- -GACCGGCa-CC-UGGGC-------UGGU---AGGGCCG- -5'
19066 3' -61.8 NC_004684.1 + 46397 0.77 0.082654
Target:  5'- gCUGGCCGggauggucgGGuCCaCGGCCAgcaugUCCCGGCg -3'
miRNA:   3'- -GACCGGCa--------CCuGG-GCUGGU-----AGGGCCG- -5'
19066 3' -61.8 NC_004684.1 + 11624 0.77 0.084899
Target:  5'- gCUGGCCGUcGGccGCCUGACCGUCggcaUCGGCc -3'
miRNA:   3'- -GACCGGCA-CC--UGGGCUGGUAG----GGCCG- -5'
19066 3' -61.8 NC_004684.1 + 15593 0.77 0.089565
Target:  5'- cCUGGCCGUGGACCgGgACUA-CCUGGa -3'
miRNA:   3'- -GACCGGCACCUGGgC-UGGUaGGGCCg -5'
19066 3' -61.8 NC_004684.1 + 30381 0.76 0.105066
Target:  5'- -cGGCgugGUGGACCCcacGCgCAUCCCGGCg -3'
miRNA:   3'- gaCCGg--CACCUGGGc--UG-GUAGGGCCG- -5'
19066 3' -61.8 NC_004684.1 + 12730 0.76 0.110771
Target:  5'- -aGGCCGUGGACCaGGCCGaggucgacgcccUCuuGGCc -3'
miRNA:   3'- gaCCGGCACCUGGgCUGGU------------AGggCCG- -5'
19066 3' -61.8 NC_004684.1 + 4510 0.75 0.113732
Target:  5'- gCUGGCggccacCGUGGACCCGGgguucaacaUCAcCCCGGCg -3'
miRNA:   3'- -GACCG------GCACCUGGGCU---------GGUaGGGCCG- -5'
19066 3' -61.8 NC_004684.1 + 9274 0.75 0.116766
Target:  5'- -cGGUCGcguuguucgcGGACCCGGCCAUgCUCGGCg -3'
miRNA:   3'- gaCCGGCa---------CCUGGGCUGGUA-GGGCCG- -5'
19066 3' -61.8 NC_004684.1 + 57796 0.75 0.119876
Target:  5'- -gGGCCaagaccugGGaACCCGACCAcggccuggUCCCGGCg -3'
miRNA:   3'- gaCCGGca------CC-UGGGCUGGU--------AGGGCCG- -5'
19066 3' -61.8 NC_004684.1 + 4140 0.75 0.126327
Target:  5'- aUGGUCGUGGACaagcugcucgggCCGACg--CCCGGCa -3'
miRNA:   3'- gACCGGCACCUG------------GGCUGguaGGGCCG- -5'
19066 3' -61.8 NC_004684.1 + 47235 0.74 0.133099
Target:  5'- --cGCCGcaaGGGCCgGGCCGUCaCCGGCg -3'
miRNA:   3'- gacCGGCa--CCUGGgCUGGUAG-GGCCG- -5'
19066 3' -61.8 NC_004684.1 + 57982 0.74 0.143886
Target:  5'- gCUGGCCGaGGACauGACCAaggugugCCUGGCg -3'
miRNA:   3'- -GACCGGCaCCUGggCUGGUa------GGGCCG- -5'
19066 3' -61.8 NC_004684.1 + 14236 0.74 0.153084
Target:  5'- -aGGCCuucacgccggacccgGUGGACCCGGUCAuUUCCGGCg -3'
miRNA:   3'- gaCCGG---------------CACCUGGGCUGGU-AGGGCCG- -5'
19066 3' -61.8 NC_004684.1 + 17591 0.73 0.159509
Target:  5'- aUGGCCGgggaGGACUaCGAgCugAUCCCGGCa -3'
miRNA:   3'- gACCGGCa---CCUGG-GCUgG--UAGGGCCG- -5'
19066 3' -61.8 NC_004684.1 + 463 0.73 0.176647
Target:  5'- gUGGCCGUGGAcaaCCgGGCCAgcgaggUCGGCa -3'
miRNA:   3'- gACCGGCACCU---GGgCUGGUag----GGCCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.