miRNA display CGI


Results 1 - 20 of 137 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
19067 3' -57.9 NC_004684.1 + 62280 0.66 0.602425
Target:  5'- -uUCaGCAGGUccaGGCgcugCUCCAGCGCCg -3'
miRNA:   3'- guAGcCGUUCGa--CCG----GAGGUUGCGGa -5'
19067 3' -57.9 NC_004684.1 + 31002 0.66 0.580938
Target:  5'- --aUGGCGcAGCUGGgC-CUGACGCCg -3'
miRNA:   3'- guaGCCGU-UCGACCgGaGGUUGCGGa -5'
19067 3' -57.9 NC_004684.1 + 26298 0.66 0.580938
Target:  5'- cCAUCGGUAcgcAGCUcGGCCaggccgCCGGgcCGCCg -3'
miRNA:   3'- -GUAGCCGU---UCGA-CCGGa-----GGUU--GCGGa -5'
19067 3' -57.9 NC_004684.1 + 22209 0.66 0.602425
Target:  5'- --cUGGCGcAGgUGGCCUCCcuGCGCg- -3'
miRNA:   3'- guaGCCGU-UCgACCGGAGGu-UGCGga -5'
19067 3' -57.9 NC_004684.1 + 25939 0.66 0.570252
Target:  5'- aCAUCGGCAAaa-GGUgcCCAACGCCg -3'
miRNA:   3'- -GUAGCCGUUcgaCCGgaGGUUGCGGa -5'
19067 3' -57.9 NC_004684.1 + 29133 0.66 0.580938
Target:  5'- --aCGuGCGAGCUGGUggugCCGACGCa- -3'
miRNA:   3'- guaGC-CGUUCGACCGga--GGUUGCGga -5'
19067 3' -57.9 NC_004684.1 + 6224 0.66 0.580938
Target:  5'- -cUCGGCcAGCUGGgCggCCAG-GCCUu -3'
miRNA:   3'- guAGCCGuUCGACCgGa-GGUUgCGGA- -5'
19067 3' -57.9 NC_004684.1 + 9337 0.66 0.61321
Target:  5'- ---gGGaCGAGgaGGCCUCCggUGCg- -3'
miRNA:   3'- guagCC-GUUCgaCCGGAGGuuGCGga -5'
19067 3' -57.9 NC_004684.1 + 10256 0.66 0.61321
Target:  5'- gCGUgGaGCGGGCcaaccaacUGGCCagCGACGCCg -3'
miRNA:   3'- -GUAgC-CGUUCG--------ACCGGagGUUGCGGa -5'
19067 3' -57.9 NC_004684.1 + 22944 0.66 0.591665
Target:  5'- -uUCGGCAAcacGCcgaaGGCCagaagcgcgCCAACGCCg -3'
miRNA:   3'- guAGCCGUU---CGa---CCGGa--------GGUUGCGGa -5'
19067 3' -57.9 NC_004684.1 + 57141 0.66 0.580938
Target:  5'- --gCGGCuGGUUcGCCUCCAugGCg- -3'
miRNA:   3'- guaGCCGuUCGAcCGGAGGUugCGga -5'
19067 3' -57.9 NC_004684.1 + 66897 0.66 0.61321
Target:  5'- -uUCGGC--GC-GGCCUUCGGCGCg- -3'
miRNA:   3'- guAGCCGuuCGaCCGGAGGUUGCGga -5'
19067 3' -57.9 NC_004684.1 + 3347 0.66 0.591665
Target:  5'- -uUCGGCGuuccaGGC-GGUgCUCCAgcACGCCUg -3'
miRNA:   3'- guAGCCGU-----UCGaCCG-GAGGU--UGCGGA- -5'
19067 3' -57.9 NC_004684.1 + 26385 0.66 0.591665
Target:  5'- aCGUCGGCGGcgauCUGGCCaaCGcCGCCa -3'
miRNA:   3'- -GUAGCCGUUc---GACCGGagGUuGCGGa -5'
19067 3' -57.9 NC_004684.1 + 13779 0.66 0.61321
Target:  5'- ---aGGCGAccaacCUGcGCCUCCAGCGCg- -3'
miRNA:   3'- guagCCGUUc----GAC-CGGAGGUUGCGga -5'
19067 3' -57.9 NC_004684.1 + 11294 0.66 0.61321
Target:  5'- gAUCGGCAccacGCUGGUggCCAcCGCUg -3'
miRNA:   3'- gUAGCCGUu---CGACCGgaGGUuGCGGa -5'
19067 3' -57.9 NC_004684.1 + 22089 0.66 0.570252
Target:  5'- --aCGGCAgcgacGGCUGGCUgguguUCCuGugGCCg -3'
miRNA:   3'- guaGCCGU-----UCGACCGG-----AGG-UugCGGa -5'
19067 3' -57.9 NC_004684.1 + 61517 0.66 0.61321
Target:  5'- --cCGGuCAGGCUggugcugcccGGCCUgCCAgucgcACGCCUg -3'
miRNA:   3'- guaGCC-GUUCGA----------CCGGA-GGU-----UGCGGA- -5'
19067 3' -57.9 NC_004684.1 + 53164 0.66 0.567055
Target:  5'- --cCGGCGuGaaGGCCUCCGgggacaggccgaccGCGCCg -3'
miRNA:   3'- guaGCCGUuCgaCCGGAGGU--------------UGCGGa -5'
19067 3' -57.9 NC_004684.1 + 48924 0.66 0.602425
Target:  5'- gGUCcGCAGGCccGGCCUCgu-CGCCg -3'
miRNA:   3'- gUAGcCGUUCGa-CCGGAGguuGCGGa -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.