miRNA display CGI


Results 1 - 20 of 137 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
19067 3' -57.9 NC_004684.1 + 10553 0.7 0.341149
Target:  5'- uCGUCGGCGGGgaGGCC-CUGGCGUUc -3'
miRNA:   3'- -GUAGCCGUUCgaCCGGaGGUUGCGGa -5'
19067 3' -57.9 NC_004684.1 + 48956 0.72 0.295188
Target:  5'- aCGUCGGCGGGCggggUGGCCggggCgGGCGCg- -3'
miRNA:   3'- -GUAGCCGUUCG----ACCGGa---GgUUGCGga -5'
19067 3' -57.9 NC_004684.1 + 47955 0.72 0.298096
Target:  5'- gCGUCGGCAcGGCUGGCgguguacgcguccauCUCCAgguACGUCa -3'
miRNA:   3'- -GUAGCCGU-UCGACCG---------------GAGGU---UGCGGa -5'
19067 3' -57.9 NC_004684.1 + 31916 0.71 0.301763
Target:  5'- gGUCGGCAuucugccggucggGGCucguucuccgUGGCCgcaaUCCGACGCCa -3'
miRNA:   3'- gUAGCCGU-------------UCG----------ACCGG----AGGUUGCGGa -5'
19067 3' -57.9 NC_004684.1 + 66935 0.71 0.302501
Target:  5'- -cUCGGCGAa--GGCCUCCGGCGCg- -3'
miRNA:   3'- guAGCCGUUcgaCCGGAGGUUGCGga -5'
19067 3' -57.9 NC_004684.1 + 9858 0.71 0.325273
Target:  5'- --cCGGUGAGCUGccGCCggaucCCGACGCCg -3'
miRNA:   3'- guaGCCGUUCGAC--CGGa----GGUUGCGGa -5'
19067 3' -57.9 NC_004684.1 + 30155 0.71 0.325273
Target:  5'- gCGUCGGCcAGUgGGCgaUCAACGCCg -3'
miRNA:   3'- -GUAGCCGuUCGaCCGgaGGUUGCGGa -5'
19067 3' -57.9 NC_004684.1 + 62842 0.7 0.340342
Target:  5'- uGUCGGUGaugguguAGCgGGCCUCCGGgGUCUg -3'
miRNA:   3'- gUAGCCGU-------UCGaCCGGAGGUUgCGGA- -5'
19067 3' -57.9 NC_004684.1 + 65895 0.7 0.341149
Target:  5'- --gCGcGCAGGUUGGCCaCCAGgGCCg -3'
miRNA:   3'- guaGC-CGUUCGACCGGaGGUUgCGGa -5'
19067 3' -57.9 NC_004684.1 + 22399 0.72 0.290866
Target:  5'- gCGUCGGCGGauuccuaaccagcccGCUgGGCCUC-AACGCCa -3'
miRNA:   3'- -GUAGCCGUU---------------CGA-CCGGAGgUUGCGGa -5'
19067 3' -57.9 NC_004684.1 + 6013 0.72 0.288013
Target:  5'- cCAUCGGaCGcGgUGGCCUuuaggccgCCAGCGCCUc -3'
miRNA:   3'- -GUAGCC-GUuCgACCGGA--------GGUUGCGGA- -5'
19067 3' -57.9 NC_004684.1 + 23683 0.72 0.267313
Target:  5'- gGUCGGCccggaccaGAGCgUGGCCUCCAAC-CUg -3'
miRNA:   3'- gUAGCCG--------UUCG-ACCGGAGGUUGcGGa -5'
19067 3' -57.9 NC_004684.1 + 6820 0.76 0.158722
Target:  5'- cCGUCGGCcuggagGAGCUGGCCUaCGGCGCg- -3'
miRNA:   3'- -GUAGCCG------UUCGACCGGAgGUUGCGga -5'
19067 3' -57.9 NC_004684.1 + 3682 0.75 0.163046
Target:  5'- uGUUGGCAcGCUGGCaggagaucgCCAGCGCCg -3'
miRNA:   3'- gUAGCCGUuCGACCGga-------GGUUGCGGa -5'
19067 3' -57.9 NC_004684.1 + 42787 0.74 0.191274
Target:  5'- --gCGGCcuGCcgGGCCUCCAGgGCCUu -3'
miRNA:   3'- guaGCCGuuCGa-CCGGAGGUUgCGGA- -5'
19067 3' -57.9 NC_004684.1 + 63472 0.74 0.201598
Target:  5'- --cCGGCAuucgggGGCgcgaGGCCUCCAgcuGCGCCUg -3'
miRNA:   3'- guaGCCGU------UCGa---CCGGAGGU---UGCGGA- -5'
19067 3' -57.9 NC_004684.1 + 6191 0.73 0.229541
Target:  5'- ---gGGCAGGUacaugucgaUGGCCUCCGGCGCg- -3'
miRNA:   3'- guagCCGUUCG---------ACCGGAGGUUGCGga -5'
19067 3' -57.9 NC_004684.1 + 23060 0.73 0.241605
Target:  5'- --cUGGcCAAGCUGGCCaaccggUUCGACGCCUu -3'
miRNA:   3'- guaGCC-GUUCGACCGG------AGGUUGCGGA- -5'
19067 3' -57.9 NC_004684.1 + 59769 0.73 0.247832
Target:  5'- --aCGGCGAGCUGGCUcUCGACcgGCCa -3'
miRNA:   3'- guaGCCGUUCGACCGGaGGUUG--CGGa -5'
19067 3' -57.9 NC_004684.1 + 11614 0.72 0.260685
Target:  5'- --aCGGCAccgAGCUGGCCgUCGGcCGCCUg -3'
miRNA:   3'- guaGCCGU---UCGACCGGaGGUU-GCGGA- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.