miRNA display CGI


Results 1 - 20 of 137 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
19067 3' -57.9 NC_004684.1 + 293 0.68 0.457372
Target:  5'- --cUGGCAcaagaguucGCUGGCCgccgaggCCAACGCCc -3'
miRNA:   3'- guaGCCGUu--------CGACCGGa------GGUUGCGGa -5'
19067 3' -57.9 NC_004684.1 + 590 0.68 0.487092
Target:  5'- uGUUGGUgGAGCUGaCCUCCGGgcCGCCUg -3'
miRNA:   3'- gUAGCCG-UUCGACcGGAGGUU--GCGGA- -5'
19067 3' -57.9 NC_004684.1 + 3347 0.66 0.591665
Target:  5'- -uUCGGCGuuccaGGC-GGUgCUCCAgcACGCCUg -3'
miRNA:   3'- guAGCCGU-----UCGaCCG-GAGGU--UGCGGA- -5'
19067 3' -57.9 NC_004684.1 + 3682 0.75 0.163046
Target:  5'- uGUUGGCAcGCUGGCaggagaucgCCAGCGCCg -3'
miRNA:   3'- gUAGCCGUuCGACCGga-------GGUUGCGGa -5'
19067 3' -57.9 NC_004684.1 + 6013 0.72 0.288013
Target:  5'- cCAUCGGaCGcGgUGGCCUuuaggccgCCAGCGCCUc -3'
miRNA:   3'- -GUAGCC-GUuCgACCGGA--------GGUUGCGGA- -5'
19067 3' -57.9 NC_004684.1 + 6191 0.73 0.229541
Target:  5'- ---gGGCAGGUacaugucgaUGGCCUCCGGCGCg- -3'
miRNA:   3'- guagCCGUUCG---------ACCGGAGGUUGCGga -5'
19067 3' -57.9 NC_004684.1 + 6224 0.66 0.580938
Target:  5'- -cUCGGCcAGCUGGgCggCCAG-GCCUu -3'
miRNA:   3'- guAGCCGuUCGACCgGa-GGUUgCGGA- -5'
19067 3' -57.9 NC_004684.1 + 6820 0.76 0.158722
Target:  5'- cCGUCGGCcuggagGAGCUGGCCUaCGGCGCg- -3'
miRNA:   3'- -GUAGCCG------UUCGACCGGAgGUUGCGga -5'
19067 3' -57.9 NC_004684.1 + 8036 0.82 0.053473
Target:  5'- aCGUCGGCuGGC-GGuCCUCCAGCGCCa -3'
miRNA:   3'- -GUAGCCGuUCGaCC-GGAGGUUGCGGa -5'
19067 3' -57.9 NC_004684.1 + 8995 0.66 0.602425
Target:  5'- --gCGGcCGGGCcaaGGCCUCCAcGCGCg- -3'
miRNA:   3'- guaGCC-GUUCGa--CCGGAGGU-UGCGga -5'
19067 3' -57.9 NC_004684.1 + 9265 0.7 0.355911
Target:  5'- uCAUCccCGAGCUGGCCgaugucgaguucCCGACGCCg -3'
miRNA:   3'- -GUAGccGUUCGACCGGa-----------GGUUGCGGa -5'
19067 3' -57.9 NC_004684.1 + 9337 0.66 0.61321
Target:  5'- ---gGGaCGAGgaGGCCUCCggUGCg- -3'
miRNA:   3'- guagCC-GUUCgaCCGGAGGuuGCGga -5'
19067 3' -57.9 NC_004684.1 + 9367 0.69 0.401022
Target:  5'- uCAUCGGCGaaauGGUcGGCCUCgGcgaaguACGCCa -3'
miRNA:   3'- -GUAGCCGU----UCGaCCGGAGgU------UGCGGa -5'
19067 3' -57.9 NC_004684.1 + 9858 0.71 0.325273
Target:  5'- --cCGGUGAGCUGccGCCggaucCCGACGCCg -3'
miRNA:   3'- guaGCCGUUCGAC--CGGa----GGUUGCGGa -5'
19067 3' -57.9 NC_004684.1 + 10178 0.7 0.357578
Target:  5'- --cCGGCAGGCUGaGCa-CCAucGCGCCg -3'
miRNA:   3'- guaGCCGUUCGAC-CGgaGGU--UGCGGa -5'
19067 3' -57.9 NC_004684.1 + 10256 0.66 0.61321
Target:  5'- gCGUgGaGCGGGCcaaccaacUGGCCagCGACGCCg -3'
miRNA:   3'- -GUAgC-CGUUCG--------ACCGGagGUUGCGGa -5'
19067 3' -57.9 NC_004684.1 + 10425 0.77 0.138621
Target:  5'- --cUGGCAcaGGUUGGCCUCCAcgcuguGCGCCg -3'
miRNA:   3'- guaGCCGU--UCGACCGGAGGU------UGCGGa -5'
19067 3' -57.9 NC_004684.1 + 10495 0.67 0.517693
Target:  5'- --aUGGC-GGCcuUGGCCUCCu-CGCCa -3'
miRNA:   3'- guaGCCGuUCG--ACCGGAGGuuGCGGa -5'
19067 3' -57.9 NC_004684.1 + 10553 0.7 0.341149
Target:  5'- uCGUCGGCGGGgaGGCC-CUGGCGUUc -3'
miRNA:   3'- -GUAGCCGUUCgaCCGGaGGUUGCGGa -5'
19067 3' -57.9 NC_004684.1 + 10796 0.68 0.467172
Target:  5'- gCGUCGGCAccguAGC-GGCaUCCGGCGgCUg -3'
miRNA:   3'- -GUAGCCGU----UCGaCCGgAGGUUGCgGA- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.