miRNA display CGI


Results 1 - 20 of 137 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
19067 3' -57.9 NC_004684.1 + 20891 1.07 0.000799
Target:  5'- uCAUCGGCAAGCUGGCCUCCAACGCCUa -3'
miRNA:   3'- -GUAGCCGUUCGACCGGAGGUUGCGGA- -5'
19067 3' -57.9 NC_004684.1 + 8036 0.82 0.053473
Target:  5'- aCGUCGGCuGGC-GGuCCUCCAGCGCCa -3'
miRNA:   3'- -GUAGCCGuUCGaCC-GGAGGUUGCGGa -5'
19067 3' -57.9 NC_004684.1 + 45382 0.81 0.067155
Target:  5'- gGUCGGCGAGCaccGGCC-CCAugGCCUc -3'
miRNA:   3'- gUAGCCGUUCGa--CCGGaGGUugCGGA- -5'
19067 3' -57.9 NC_004684.1 + 10425 0.77 0.138621
Target:  5'- --cUGGCAcaGGUUGGCCUCCAcgcuguGCGCCg -3'
miRNA:   3'- guaGCCGU--UCGACCGGAGGU------UGCGGa -5'
19067 3' -57.9 NC_004684.1 + 6820 0.76 0.158722
Target:  5'- cCGUCGGCcuggagGAGCUGGCCUaCGGCGCg- -3'
miRNA:   3'- -GUAGCCG------UUCGACCGGAgGUUGCGga -5'
19067 3' -57.9 NC_004684.1 + 65724 0.75 0.163046
Target:  5'- gCGUCGGUuccagggagucGAGCUGGCC-CCAcuuggGCGCCg -3'
miRNA:   3'- -GUAGCCG-----------UUCGACCGGaGGU-----UGCGGa -5'
19067 3' -57.9 NC_004684.1 + 3682 0.75 0.163046
Target:  5'- uGUUGGCAcGCUGGCaggagaucgCCAGCGCCg -3'
miRNA:   3'- gUAGCCGUuCGACCGga-------GGUUGCGGa -5'
19067 3' -57.9 NC_004684.1 + 52290 0.75 0.186288
Target:  5'- --aCGGCAAGgUcGGCCUCCAgggcggccaccGCGCCg -3'
miRNA:   3'- guaGCCGUUCgA-CCGGAGGU-----------UGCGGa -5'
19067 3' -57.9 NC_004684.1 + 42787 0.74 0.191274
Target:  5'- --gCGGCcuGCcgGGCCUCCAGgGCCUu -3'
miRNA:   3'- guaGCCGuuCGa-CCGGAGGUUgCGGA- -5'
19067 3' -57.9 NC_004684.1 + 63472 0.74 0.201598
Target:  5'- --cCGGCAuucgggGGCgcgaGGCCUCCAgcuGCGCCUg -3'
miRNA:   3'- guaGCCGU------UCGa---CCGGAGGU---UGCGGA- -5'
19067 3' -57.9 NC_004684.1 + 29420 0.74 0.20694
Target:  5'- gCGUCGGCAacgauGGCcuccaggacgaUGGCCUCCAccGCGUCg -3'
miRNA:   3'- -GUAGCCGU-----UCG-----------ACCGGAGGU--UGCGGa -5'
19067 3' -57.9 NC_004684.1 + 45177 0.73 0.223702
Target:  5'- cCGUCGcGCAGGgaGGCCaCCuGCGCCa -3'
miRNA:   3'- -GUAGC-CGUUCgaCCGGaGGuUGCGGa -5'
19067 3' -57.9 NC_004684.1 + 6191 0.73 0.229541
Target:  5'- ---gGGCAGGUacaugucgaUGGCCUCCGGCGCg- -3'
miRNA:   3'- guagCCGUUCG---------ACCGGAGGUUGCGga -5'
19067 3' -57.9 NC_004684.1 + 43833 0.73 0.235508
Target:  5'- --cCGGCAGGCUguccaGGCCgcgaCCGAUGCCg -3'
miRNA:   3'- guaGCCGUUCGA-----CCGGa---GGUUGCGGa -5'
19067 3' -57.9 NC_004684.1 + 28895 0.73 0.235508
Target:  5'- cCGUCGGCGucGgUGGCCUugCUGACGCCg -3'
miRNA:   3'- -GUAGCCGUu-CgACCGGA--GGUUGCGGa -5'
19067 3' -57.9 NC_004684.1 + 23060 0.73 0.241605
Target:  5'- --cUGGcCAAGCUGGCCaaccggUUCGACGCCUu -3'
miRNA:   3'- guaGCC-GUUCGACCGG------AGGUUGCGGA- -5'
19067 3' -57.9 NC_004684.1 + 28981 0.73 0.247832
Target:  5'- gCAUCGGcCAGGUUcucGGUCUCC-ACGCCg -3'
miRNA:   3'- -GUAGCC-GUUCGA---CCGGAGGuUGCGGa -5'
19067 3' -57.9 NC_004684.1 + 59769 0.73 0.247832
Target:  5'- --aCGGCGAGCUGGCUcUCGACcgGCCa -3'
miRNA:   3'- guaGCCGUUCGACCGGaGGUUG--CGGa -5'
19067 3' -57.9 NC_004684.1 + 11614 0.72 0.260685
Target:  5'- --aCGGCAccgAGCUGGCCgUCGGcCGCCUg -3'
miRNA:   3'- guaGCCGU---UCGACCGGaGGUU-GCGGA- -5'
19067 3' -57.9 NC_004684.1 + 43391 0.72 0.260685
Target:  5'- aCGUCGGCGAacuGCUGGCCUggCGACGgCUu -3'
miRNA:   3'- -GUAGCCGUU---CGACCGGAg-GUUGCgGA- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.