Results 1 - 20 of 53 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. |
strand![]() |
Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
19071 | 3' | -56.4 | NC_004684.1 | + | 19612 | 1.1 | 0.000927 |
Target: 5'- aCAUCCUGGCCGACUGACGCACUACCGg -3' miRNA: 3'- -GUAGGACCGGCUGACUGCGUGAUGGC- -5' |
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19071 | 3' | -56.4 | NC_004684.1 | + | 65109 | 0.67 | 0.635528 |
Target: 5'- gCGUCgUGGCCcaGGCUGGCgGCAaUGCCc -3' miRNA: 3'- -GUAGgACCGG--CUGACUG-CGUgAUGGc -5' |
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19071 | 3' | -56.4 | NC_004684.1 | + | 1375 | 0.67 | 0.645211 |
Target: 5'- aCAcCCUGGCCGACgccaaGGCcgccguuGCACUgGCCa -3' miRNA: 3'- -GUaGGACCGGCUGa----CUG-------CGUGA-UGGc -5' |
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19071 | 3' | -56.4 | NC_004684.1 | + | 16413 | 0.66 | 0.731074 |
Target: 5'- aCAUCUgccaggGGUCGgccuacgacguGCUGGCGCAC-ACCa -3' miRNA: 3'- -GUAGGa-----CCGGC-----------UGACUGCGUGaUGGc -5' |
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19071 | 3' | -56.4 | NC_004684.1 | + | 30026 | 0.7 | 0.468489 |
Target: 5'- -cUCCUGGCUGAgCgUGaacGCGCGCUcGCCGg -3' miRNA: 3'- guAGGACCGGCU-G-AC---UGCGUGA-UGGC- -5' |
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19071 | 3' | -56.4 | NC_004684.1 | + | 2061 | 0.69 | 0.508597 |
Target: 5'- cCAUCgUGGCCuGcCUGGCGCug-GCCGu -3' miRNA: 3'- -GUAGgACCGG-CuGACUGCGugaUGGC- -5' |
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19071 | 3' | -56.4 | NC_004684.1 | + | 58962 | 0.69 | 0.518854 |
Target: 5'- --cCCUGGcCCGGCgGGCGCGCggguuCCa -3' miRNA: 3'- guaGGACC-GGCUGaCUGCGUGau---GGc -5' |
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19071 | 3' | -56.4 | NC_004684.1 | + | 13779 | 0.69 | 0.528154 |
Target: 5'- uGUCCgGGCCGcgcguGCUcaagagcGGCGCACUGuCCGa -3' miRNA: 3'- gUAGGaCCGGC-----UGA-------CUGCGUGAU-GGC- -5' |
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19071 | 3' | -56.4 | NC_004684.1 | + | 7937 | 0.69 | 0.539603 |
Target: 5'- aCAUCgccGCCGACcGGCGCAC-ACCGg -3' miRNA: 3'- -GUAGgacCGGCUGaCUGCGUGaUGGC- -5' |
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19071 | 3' | -56.4 | NC_004684.1 | + | 62679 | 0.67 | 0.62907 |
Target: 5'- gGUCCUGGCCGuagcaggccagaaUGAUGCGCgcguUCGg -3' miRNA: 3'- gUAGGACCGGCug-----------ACUGCGUGau--GGC- -5' |
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19071 | 3' | -56.4 | NC_004684.1 | + | 23503 | 0.68 | 0.591483 |
Target: 5'- uCAUCCaccugcccagcgaUGcGCCGAacaUGGCGCacauGCUGCCGa -3' miRNA: 3'- -GUAGG-------------AC-CGGCUg--ACUGCG----UGAUGGC- -5' |
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19071 | 3' | -56.4 | NC_004684.1 | + | 27520 | 0.69 | 0.539603 |
Target: 5'- --gCCUGGgCGAgCUGAUGCGC-GCCa -3' miRNA: 3'- guaGGACCgGCU-GACUGCGUGaUGGc -5' |
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19071 | 3' | -56.4 | NC_004684.1 | + | 18277 | 0.73 | 0.326066 |
Target: 5'- -uUCCaGGCCGACgccgacggcgaccUGugGCAcCUGCCGg -3' miRNA: 3'- guAGGaCCGGCUG-------------ACugCGU-GAUGGC- -5' |
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19071 | 3' | -56.4 | NC_004684.1 | + | 53403 | 0.68 | 0.592553 |
Target: 5'- uGUCCaggUGGCCgGGCUGgccugcgccGCGCgACUGCCa -3' miRNA: 3'- gUAGG---ACCGG-CUGAC---------UGCG-UGAUGGc -5' |
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19071 | 3' | -56.4 | NC_004684.1 | + | 41092 | 0.71 | 0.411561 |
Target: 5'- --gCCUGGCCGAgCUG-CGUACcgaugGCCGa -3' miRNA: 3'- guaGGACCGGCU-GACuGCGUGa----UGGC- -5' |
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19071 | 3' | -56.4 | NC_004684.1 | + | 50584 | 0.69 | 0.529191 |
Target: 5'- --aCCUGGCgCGAaUGGCGCGCccACCa -3' miRNA: 3'- guaGGACCG-GCUgACUGCGUGa-UGGc -5' |
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19071 | 3' | -56.4 | NC_004684.1 | + | 54477 | 0.67 | 0.624766 |
Target: 5'- ---gUUGGCCGAC-GGCGCACcggcACCGc -3' miRNA: 3'- guagGACCGGCUGaCUGCGUGa---UGGC- -5' |
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19071 | 3' | -56.4 | NC_004684.1 | + | 17070 | 0.67 | 0.635528 |
Target: 5'- cCcgCCUGGCCG---GGCGCACcgACUGg -3' miRNA: 3'- -GuaGGACCGGCugaCUGCGUGa-UGGC- -5' |
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19071 | 3' | -56.4 | NC_004684.1 | + | 1686 | 0.71 | 0.420752 |
Target: 5'- --aCCaGGCCGAgCUGGCGCGC-AUCGa -3' miRNA: 3'- guaGGaCCGGCU-GACUGCGUGaUGGC- -5' |
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19071 | 3' | -56.4 | NC_004684.1 | + | 5599 | 0.69 | 0.508597 |
Target: 5'- --gCCgacggGGCCGAgCUGGCGCGCauggUGCUGg -3' miRNA: 3'- guaGGa----CCGGCU-GACUGCGUG----AUGGC- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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