miRNA display CGI


Results 1 - 20 of 93 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
19078 3' -58.8 NC_004684.1 + 36581 0.66 0.62917
Target:  5'- cCGGuUGGUGCccGAcGGCaCGGUGuagguGCCGGa -3'
miRNA:   3'- -GCU-ACCGCGa-CUaCCG-GCCAC-----UGGCC- -5'
19078 3' -58.8 NC_004684.1 + 9532 0.66 0.62917
Target:  5'- cCGAccGCgaGCUGGUGcGCCGGUuggaGCCGGu -3'
miRNA:   3'- -GCUacCG--CGACUAC-CGGCCAc---UGGCC- -5'
19078 3' -58.8 NC_004684.1 + 28803 0.66 0.62917
Target:  5'- cCGAgcUGGUGCUcGAcGGU--GUGACCGGg -3'
miRNA:   3'- -GCU--ACCGCGA-CUaCCGgcCACUGGCC- -5'
19078 3' -58.8 NC_004684.1 + 43856 0.66 0.618677
Target:  5'- cCGAUGcCGCcgagguuggUGAgcaGGCUGGUGacGCCGGa -3'
miRNA:   3'- -GCUACcGCG---------ACUa--CCGGCCAC--UGGCC- -5'
19078 3' -58.8 NC_004684.1 + 6778 0.66 0.618677
Target:  5'- ---gGGCGac-GUGcGCCgGGUGACCGGc -3'
miRNA:   3'- gcuaCCGCgacUAC-CGG-CCACUGGCC- -5'
19078 3' -58.8 NC_004684.1 + 8594 0.66 0.618677
Target:  5'- uGAacGCGCcGGUGGCCucgaacaagcccGGUGcACCGGc -3'
miRNA:   3'- gCUacCGCGaCUACCGG------------CCAC-UGGCC- -5'
19078 3' -58.8 NC_004684.1 + 61537 0.66 0.618677
Target:  5'- ---aGGCGCUGGcgugccgcugguUGGuCCGG-GugCGGc -3'
miRNA:   3'- gcuaCCGCGACU------------ACC-GGCCaCugGCC- -5'
19078 3' -58.8 NC_004684.1 + 28904 0.66 0.608195
Target:  5'- uCGGUGGCcuuGCUGAc-GCCGGUG-CCu- -3'
miRNA:   3'- -GCUACCG---CGACUacCGGCCACuGGcc -5'
19078 3' -58.8 NC_004684.1 + 60948 0.66 0.608195
Target:  5'- uCGAcaUGcGUGCUGuacaccucGUGGCUGGUGGCguCGGc -3'
miRNA:   3'- -GCU--AC-CGCGAC--------UACCGGCCACUG--GCC- -5'
19078 3' -58.8 NC_004684.1 + 47036 0.66 0.608195
Target:  5'- gGGUGGC-CUGcgcGGUgaCGGUGcACCGGg -3'
miRNA:   3'- gCUACCGcGACua-CCG--GCCAC-UGGCC- -5'
19078 3' -58.8 NC_004684.1 + 27113 0.66 0.608195
Target:  5'- aCGAcGGCGCggucaacggGGUGGCCuucuacaaGGUcGACCGc -3'
miRNA:   3'- -GCUaCCGCGa--------CUACCGG--------CCA-CUGGCc -5'
19078 3' -58.8 NC_004684.1 + 42657 0.66 0.607148
Target:  5'- gCGAUGaGCGCggugGAgGGCaucacggCGGUGGCCa- -3'
miRNA:   3'- -GCUAC-CGCGa---CUaCCG-------GCCACUGGcc -5'
19078 3' -58.8 NC_004684.1 + 51898 0.66 0.597732
Target:  5'- uGGUGGCaccgaacucgGCgaacgGGUGGCUGGUGGuCCa- -3'
miRNA:   3'- gCUACCG----------CGa----CUACCGGCCACU-GGcc -5'
19078 3' -58.8 NC_004684.1 + 46668 0.66 0.597732
Target:  5'- ---aGGCGCUccucgGGUUcgggGGUGACCGGg -3'
miRNA:   3'- gcuaCCGCGAcua--CCGG----CCACUGGCC- -5'
19078 3' -58.8 NC_004684.1 + 54259 0.66 0.597732
Target:  5'- gCGA-GGCGCUGcGUGgagaagcuGCCGcGcUGGCCGGu -3'
miRNA:   3'- -GCUaCCGCGAC-UAC--------CGGC-C-ACUGGCC- -5'
19078 3' -58.8 NC_004684.1 + 41461 0.66 0.596686
Target:  5'- -aGUGGgGCUGAccccggcggugcUGGCCaaGGUGAuggacaaCCGGg -3'
miRNA:   3'- gcUACCgCGACU------------ACCGG--CCACU-------GGCC- -5'
19078 3' -58.8 NC_004684.1 + 29510 0.66 0.587295
Target:  5'- uGAccUGGUGCaGAaaggccugcgcUGGUCGGUGguuGCCGGu -3'
miRNA:   3'- gCU--ACCGCGaCU-----------ACCGGCCAC---UGGCC- -5'
19078 3' -58.8 NC_004684.1 + 36881 0.67 0.581049
Target:  5'- uGGUGGCcguggucggcaaccaGCUcGGacUGGCCGGUGGcaucgcCCGGu -3'
miRNA:   3'- gCUACCG---------------CGA-CU--ACCGGCCACU------GGCC- -5'
19078 3' -58.8 NC_004684.1 + 18025 0.67 0.576893
Target:  5'- -cGUGGCGUUGGaGGUCuG-GACCGGc -3'
miRNA:   3'- gcUACCGCGACUaCCGGcCaCUGGCC- -5'
19078 3' -58.8 NC_004684.1 + 31000 0.67 0.576893
Target:  5'- uGAUGGCGCaGcugGGCCuGacgccGACCGGu -3'
miRNA:   3'- gCUACCGCGaCua-CCGGcCa----CUGGCC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.