miRNA display CGI


Results 1 - 20 of 31 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
19078 5' -48.5 NC_004684.1 + 41468 0.66 0.98844
Target:  5'- uGCCGaugUUCggCGAGAGcgcgcUGAUGCCgGACa -3'
miRNA:   3'- gUGGC---AAGaaGCUUUU-----ACUGCGG-CUG- -5'
19078 5' -48.5 NC_004684.1 + 65350 0.66 0.98844
Target:  5'- gGCCGUagUCcaCGAAcagGGCGCUGGCc -3'
miRNA:   3'- gUGGCA--AGaaGCUUuuaCUGCGGCUG- -5'
19078 5' -48.5 NC_004684.1 + 46215 0.66 0.984908
Target:  5'- cCGCCcaGUUCcUCGAAcGUGGCGUgGAa -3'
miRNA:   3'- -GUGG--CAAGaAGCUUuUACUGCGgCUg -5'
19078 5' -48.5 NC_004684.1 + 13838 0.66 0.984908
Target:  5'- gCGCCGUcgugguUCUcCGAGGucauccGCGCCGACc -3'
miRNA:   3'- -GUGGCA------AGAaGCUUUuac---UGCGGCUG- -5'
19078 5' -48.5 NC_004684.1 + 57916 0.66 0.984908
Target:  5'- gGCCGggCUgacCGccGAUGACauuGCCGACc -3'
miRNA:   3'- gUGGCaaGAa--GCuuUUACUG---CGGCUG- -5'
19078 5' -48.5 NC_004684.1 + 9373 0.66 0.982859
Target:  5'- aGCCGgaCacCGAGGAcGACGCCGGu -3'
miRNA:   3'- gUGGCaaGaaGCUUUUaCUGCGGCUg -5'
19078 5' -48.5 NC_004684.1 + 6156 0.67 0.978143
Target:  5'- uGCUGUUCaauggCGAGGuguggcUGAuCGCCGACg -3'
miRNA:   3'- gUGGCAAGaa---GCUUUu-----ACU-GCGGCUG- -5'
19078 5' -48.5 NC_004684.1 + 28316 0.67 0.975453
Target:  5'- cCACCGgcCUUCauGAucguguUGACGCUGGCc -3'
miRNA:   3'- -GUGGCaaGAAG--CUuuu---ACUGCGGCUG- -5'
19078 5' -48.5 NC_004684.1 + 40769 0.67 0.975453
Target:  5'- gCGCCGacggugUCgUUGgcGAUGACGCCGcCg -3'
miRNA:   3'- -GUGGCa-----AGaAGCuuUUACUGCGGCuG- -5'
19078 5' -48.5 NC_004684.1 + 13500 0.67 0.97253
Target:  5'- cCGCCGUcaaggagugCaUCGAAAucccGUG-CGCCGACg -3'
miRNA:   3'- -GUGGCAa--------GaAGCUUU----UACuGCGGCUG- -5'
19078 5' -48.5 NC_004684.1 + 26634 0.68 0.965945
Target:  5'- aCACCGUcggcgcggaguUCUUCGggGugucgGAggUGCCGAUc -3'
miRNA:   3'- -GUGGCA-----------AGAAGCuuUua---CU--GCGGCUG- -5'
19078 5' -48.5 NC_004684.1 + 23855 0.68 0.965945
Target:  5'- uCACCGU---UCGGAGGUGGCGCa-GCc -3'
miRNA:   3'- -GUGGCAagaAGCUUUUACUGCGgcUG- -5'
19078 5' -48.5 NC_004684.1 + 33547 0.68 0.965945
Target:  5'- gCACCGUcCUgUUGAGGcgcGGCGUCGACa -3'
miRNA:   3'- -GUGGCAaGA-AGCUUUua-CUGCGGCUG- -5'
19078 5' -48.5 NC_004684.1 + 5672 0.68 0.962266
Target:  5'- aGCCGUgg-UCGGAGGUGGCcggggcCCGGCc -3'
miRNA:   3'- gUGGCAagaAGCUUUUACUGc-----GGCUG- -5'
19078 5' -48.5 NC_004684.1 + 25251 0.68 0.95832
Target:  5'- gGCCGUg---CGu-GGUGGCGUCGGCg -3'
miRNA:   3'- gUGGCAagaaGCuuUUACUGCGGCUG- -5'
19078 5' -48.5 NC_004684.1 + 25519 0.68 0.954099
Target:  5'- gGCUGUUC-UCGAccgccGACGCCGGg -3'
miRNA:   3'- gUGGCAAGaAGCUuuua-CUGCGGCUg -5'
19078 5' -48.5 NC_004684.1 + 4204 0.68 0.9496
Target:  5'- gGCCGUUCggccgcgUCGAGuc-GAC-CCGGCg -3'
miRNA:   3'- gUGGCAAGa------AGCUUuuaCUGcGGCUG- -5'
19078 5' -48.5 NC_004684.1 + 46539 0.69 0.944816
Target:  5'- gCACCGg---UCGGAAGaacGACGCCGGu -3'
miRNA:   3'- -GUGGCaagaAGCUUUUa--CUGCGGCUg -5'
19078 5' -48.5 NC_004684.1 + 43028 0.69 0.934381
Target:  5'- uCGCCGacCUUggUGAugGUGGCGUCGACc -3'
miRNA:   3'- -GUGGCaaGAA--GCUuuUACUGCGGCUG- -5'
19078 5' -48.5 NC_004684.1 + 55742 0.69 0.928725
Target:  5'- cCGCCGUgCUggCGugGccGAUGCCGACg -3'
miRNA:   3'- -GUGGCAaGAa-GCuuUuaCUGCGGCUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.