miRNA display CGI


Results 1 - 20 of 139 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
19079 3' -57.2 NC_004684.1 + 66596 0.71 0.369494
Target:  5'- cGUCGCGCAcGAC-CUGGuucuuGGCCaGCu -3'
miRNA:   3'- aCGGUGCGUuCUGuGACCu----CCGGaCG- -5'
19079 3' -57.2 NC_004684.1 + 65813 0.66 0.639875
Target:  5'- -aCCGgGCAGGugACccGGAGGCaccgGCg -3'
miRNA:   3'- acGGUgCGUUCugUGa-CCUCCGga--CG- -5'
19079 3' -57.2 NC_004684.1 + 65405 0.66 0.644206
Target:  5'- cUGCCagaacgcgaguucgcGCGCcAGGCGCUGcgcuGGCgUGCg -3'
miRNA:   3'- -ACGG---------------UGCGuUCUGUGACcu--CCGgACG- -5'
19079 3' -57.2 NC_004684.1 + 65334 0.66 0.629045
Target:  5'- cGCCAgGCAGGcCACgaUGGcGGCCcccaggGCc -3'
miRNA:   3'- aCGGUgCGUUCuGUG--ACCuCCGGa-----CG- -5'
19079 3' -57.2 NC_004684.1 + 63963 0.67 0.564427
Target:  5'- gUGCCGCu---GACugUGGcGGCCaGCg -3'
miRNA:   3'- -ACGGUGcguuCUGugACCuCCGGaCG- -5'
19079 3' -57.2 NC_004684.1 + 63690 0.68 0.543227
Target:  5'- gGCCAgCGCGGcGGCGCUGGcGaucuCCUGCc -3'
miRNA:   3'- aCGGU-GCGUU-CUGUGACCuCc---GGACG- -5'
19079 3' -57.2 NC_004684.1 + 63261 0.67 0.575111
Target:  5'- cGCCgauGCGCuccuGGAC-CUGGAGccGCCggGCg -3'
miRNA:   3'- aCGG---UGCGu---UCUGuGACCUC--CGGa-CG- -5'
19079 3' -57.2 NC_004684.1 + 62730 0.68 0.522295
Target:  5'- aGgCACGCAGGACGgUGuacaccGAGGCCaugGUg -3'
miRNA:   3'- aCgGUGCGUUCUGUgAC------CUCCGGa--CG- -5'
19079 3' -57.2 NC_004684.1 + 62352 0.66 0.607401
Target:  5'- cGCCGggUGCcAGACGCgUGGuGGCCaccguUGCc -3'
miRNA:   3'- aCGGU--GCGuUCUGUG-ACCuCCGG-----ACG- -5'
19079 3' -57.2 NC_004684.1 + 62306 0.74 0.238372
Target:  5'- cGCCGCGCGGGccuccgcgaucucauCGCcGGAGGCCUccaGCa -3'
miRNA:   3'- aCGGUGCGUUCu--------------GUGaCCUCCGGA---CG- -5'
19079 3' -57.2 NC_004684.1 + 62163 0.66 0.650699
Target:  5'- gGCCGCGCGcGGACACcau-GGCCUc- -3'
miRNA:   3'- aCGGUGCGU-UCUGUGaccuCCGGAcg -5'
19079 3' -57.2 NC_004684.1 + 62002 0.68 0.511945
Target:  5'- cGCCGCGCAcaaucgcgacGGGgAC-GGGGGCCa-- -3'
miRNA:   3'- aCGGUGCGU----------UCUgUGaCCUCCGGacg -5'
19079 3' -57.2 NC_004684.1 + 61862 0.68 0.491509
Target:  5'- aGCCugGCGGGACcauCgucGGAGGUcauCUGUc -3'
miRNA:   3'- aCGGugCGUUCUGu--Ga--CCUCCG---GACG- -5'
19079 3' -57.2 NC_004684.1 + 61354 0.74 0.225835
Target:  5'- aGCUgggcCGCGAGGCGCUGGcGGCCUa- -3'
miRNA:   3'- aCGGu---GCGUUCUGUGACCuCCGGAcg -5'
19079 3' -57.2 NC_004684.1 + 60193 0.68 0.522295
Target:  5'- gGCCugGCAGGAUguGCUGaucggcguuGGCCUcgGCg -3'
miRNA:   3'- aCGGugCGUUCUG--UGACcu-------CCGGA--CG- -5'
19079 3' -57.2 NC_004684.1 + 59339 0.69 0.471459
Target:  5'- aGCCGCacccuGCu-GGCGCUGGAGGaCC-GCc -3'
miRNA:   3'- aCGGUG-----CGuuCUGUGACCUCC-GGaCG- -5'
19079 3' -57.2 NC_004684.1 + 59132 0.66 0.646371
Target:  5'- cGCgGCGCAcguggcgGGACugcauguugucggcGCUGGu-GCCUGCg -3'
miRNA:   3'- aCGgUGCGU-------UCUG--------------UGACCucCGGACG- -5'
19079 3' -57.2 NC_004684.1 + 58378 0.74 0.24392
Target:  5'- cGCCcCGCAcGGCACcgcgcgUGGAGGCCUugGCc -3'
miRNA:   3'- aCGGuGCGUuCUGUG------ACCUCCGGA--CG- -5'
19079 3' -57.2 NC_004684.1 + 58038 0.67 0.575111
Target:  5'- gGCUccucGCGcCGGGACGCaccGGAGGCCUc- -3'
miRNA:   3'- aCGG----UGC-GUUCUGUGa--CCUCCGGAcg -5'
19079 3' -57.2 NC_004684.1 + 57874 0.69 0.471459
Target:  5'- cGgCACGCcAGACcggugcugGCUGGuGGCCggGCu -3'
miRNA:   3'- aCgGUGCGuUCUG--------UGACCuCCGGa-CG- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.