miRNA display CGI


Results 1 - 20 of 43 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
19079 5' -61.6 NC_004684.1 + 2096 0.66 0.485339
Target:  5'- aCUGgUGGcGCagcacuacGGcgCGGCGUGGUCGGa -3'
miRNA:   3'- -GACgACC-CGga------CCa-GCUGCACCGGCC- -5'
19079 5' -61.6 NC_004684.1 + 55660 0.66 0.485339
Target:  5'- -aGgaGGGCCUGG-CGGCGcaccagcuGCUGGa -3'
miRNA:   3'- gaCgaCCCGGACCaGCUGCac------CGGCC- -5'
19079 5' -61.6 NC_004684.1 + 415 0.66 0.47577
Target:  5'- -aGCUGGGCgaCUggcaccccgaGGUCGAC--GGCUGGg -3'
miRNA:   3'- gaCGACCCG--GA----------CCAGCUGcaCCGGCC- -5'
19079 5' -61.6 NC_004684.1 + 39979 0.66 0.466297
Target:  5'- cCUGCgcuccGGGCacCUGGUCGGUGUGGUgGc -3'
miRNA:   3'- -GACGa----CCCG--GACCAGCUGCACCGgCc -5'
19079 5' -61.6 NC_004684.1 + 63416 0.66 0.466297
Target:  5'- -aGCUGcacaccGGCCaGGaUGACcUGGCCGGg -3'
miRNA:   3'- gaCGAC------CCGGaCCaGCUGcACCGGCC- -5'
19079 5' -61.6 NC_004684.1 + 17289 0.66 0.456922
Target:  5'- -aGgUGGgggccagccGCCUGGUCGugGUGGaCUGc -3'
miRNA:   3'- gaCgACC---------CGGACCAGCugCACC-GGCc -5'
19079 5' -61.6 NC_004684.1 + 16439 0.66 0.451346
Target:  5'- gUGCUGGcgcacaccaucgugcGCCUGGaCGA---GGCCGGg -3'
miRNA:   3'- gACGACC---------------CGGACCaGCUgcaCCGGCC- -5'
19079 5' -61.6 NC_004684.1 + 43401 0.66 0.447649
Target:  5'- aCUGCU-GGCCUGG-CGACGgcuugagcGaGCCGu -3'
miRNA:   3'- -GACGAcCCGGACCaGCUGCa-------C-CGGCc -5'
19079 5' -61.6 NC_004684.1 + 62966 0.66 0.447649
Target:  5'- aUGgUGGcguGCUcggUGGUgCGcACGUGGCCGGu -3'
miRNA:   3'- gACgACC---CGG---ACCA-GC-UGCACCGGCC- -5'
19079 5' -61.6 NC_004684.1 + 49203 0.66 0.447649
Target:  5'- cCUGCUcggucGGCCagucGGUCGGUGccgGGCCGGg -3'
miRNA:   3'- -GACGAc----CCGGa---CCAGCUGCa--CCGGCC- -5'
19079 5' -61.6 NC_004684.1 + 53385 0.66 0.438482
Target:  5'- -aGUUGGGCCacugcaccGuGUCcAgGUGGCCGGg -3'
miRNA:   3'- gaCGACCCGGa-------C-CAGcUgCACCGGCC- -5'
19079 5' -61.6 NC_004684.1 + 47736 0.66 0.438482
Target:  5'- uUG-UGGGUgUGGUUGuguugcGCGuUGGCCGGa -3'
miRNA:   3'- gACgACCCGgACCAGC------UGC-ACCGGCC- -5'
19079 5' -61.6 NC_004684.1 + 25995 0.66 0.438482
Target:  5'- -cGCUGGcgcuCCUGG-CGGC--GGCCGGg -3'
miRNA:   3'- gaCGACCc---GGACCaGCUGcaCCGGCC- -5'
19079 5' -61.6 NC_004684.1 + 40341 0.67 0.420475
Target:  5'- -cGCUGGGCaggucgCUGG-CGGCGgccuUGGCCuuGGg -3'
miRNA:   3'- gaCGACCCG------GACCaGCUGC----ACCGG--CC- -5'
19079 5' -61.6 NC_004684.1 + 50593 0.67 0.402922
Target:  5'- aUGCcgucGGGUCggcGGUCGgcgggucaucgGCGUGGCCGa -3'
miRNA:   3'- gACGa---CCCGGa--CCAGC-----------UGCACCGGCc -5'
19079 5' -61.6 NC_004684.1 + 22992 0.67 0.402922
Target:  5'- -cGCUGaucaacGGCCUGGgcCGAC-UGGCCGc -3'
miRNA:   3'- gaCGAC------CCGGACCa-GCUGcACCGGCc -5'
19079 5' -61.6 NC_004684.1 + 3257 0.67 0.402922
Target:  5'- gCUGCU-GGCCUGGcCGGacauCGUGgacgcacugcuGCCGGa -3'
miRNA:   3'- -GACGAcCCGGACCaGCU----GCAC-----------CGGCC- -5'
19079 5' -61.6 NC_004684.1 + 11722 0.67 0.394322
Target:  5'- cCUGCUGGGCgUUGGUCcGgGUaGGCgaGGa -3'
miRNA:   3'- -GACGACCCG-GACCAGcUgCA-CCGg-CC- -5'
19079 5' -61.6 NC_004684.1 + 5633 0.67 0.394322
Target:  5'- -aGCUGGacGCCUGGuUCGccCGUGGCgGa -3'
miRNA:   3'- gaCGACC--CGGACC-AGCu-GCACCGgCc -5'
19079 5' -61.6 NC_004684.1 + 66167 0.67 0.385841
Target:  5'- uUGCUGGcagauccaGCCgguggUGGUgGugGUGGCCa- -3'
miRNA:   3'- gACGACC--------CGG-----ACCAgCugCACCGGcc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.