miRNA display CGI


Results 1 - 20 of 77 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
19080 5' -53.2 NC_004684.1 + 15112 1.09 0.001901
Target:  5'- gUGCCAGCAAGCUGGUGUUCCACAACGc -3'
miRNA:   3'- -ACGGUCGUUCGACCACAAGGUGUUGC- -5'
19080 5' -53.2 NC_004684.1 + 33712 0.68 0.70332
Target:  5'- gUGuCCAGCGcGgUGGUGgUgCACAGCGa -3'
miRNA:   3'- -AC-GGUCGUuCgACCACaAgGUGUUGC- -5'
19080 5' -53.2 NC_004684.1 + 27381 0.68 0.725026
Target:  5'- cGCCGcuaacGCAGGCUGGUaagCCACcACa -3'
miRNA:   3'- aCGGU-----CGUUCGACCAcaaGGUGuUGc -5'
19080 5' -53.2 NC_004684.1 + 31164 0.66 0.852654
Target:  5'- cGCCAGCGgucucGGC-GGUGg-CCACGcuGCGc -3'
miRNA:   3'- aCGGUCGU-----UCGaCCACaaGGUGU--UGC- -5'
19080 5' -53.2 NC_004684.1 + 41259 0.73 0.463963
Target:  5'- gGCCAGCGAgguGCUGGUGcggUCgGaCAGCGc -3'
miRNA:   3'- aCGGUCGUU---CGACCACa--AGgU-GUUGC- -5'
19080 5' -53.2 NC_004684.1 + 12212 0.72 0.515986
Target:  5'- cGCCAGCGGuGCguucuccgggGGUGcUUCCgGCAGCGg -3'
miRNA:   3'- aCGGUCGUU-CGa---------CCAC-AAGG-UGUUGC- -5'
19080 5' -53.2 NC_004684.1 + 24165 0.71 0.530981
Target:  5'- cGCUGGCGAgaagaucaaggacauGCUGGUGUUCCAgCAGg- -3'
miRNA:   3'- aCGGUCGUU---------------CGACCACAAGGU-GUUgc -5'
19080 5' -53.2 NC_004684.1 + 44983 0.71 0.548307
Target:  5'- gGcCCAGCGGGCUGGUuaGgaaUCCGcCGACGc -3'
miRNA:   3'- aC-GGUCGUUCGACCA--Ca--AGGU-GUUGC- -5'
19080 5' -53.2 NC_004684.1 + 11375 0.71 0.559226
Target:  5'- gGCCAGC-AGCgUGGUGgUgCGCGACu -3'
miRNA:   3'- aCGGUCGuUCG-ACCACaAgGUGUUGc -5'
19080 5' -53.2 NC_004684.1 + 23726 0.69 0.692354
Target:  5'- cGCCGuGUggGCUGa-GUUCCAgGACGu -3'
miRNA:   3'- aCGGU-CGuuCGACcaCAAGGUgUUGC- -5'
19080 5' -53.2 NC_004684.1 + 39122 0.7 0.624586
Target:  5'- cGCCAGCGgccucgcgcaccaGGCUGGccgGgUCCACcGCGc -3'
miRNA:   3'- aCGGUCGU-------------UCGACCa--CaAGGUGuUGC- -5'
19080 5' -53.2 NC_004684.1 + 55813 0.71 0.552667
Target:  5'- -aCCGGCGGGCUGGUGUggaacucgcgguagCCGCugugguuGCGg -3'
miRNA:   3'- acGGUCGUUCGACCACAa-------------GGUGu------UGC- -5'
19080 5' -53.2 NC_004684.1 + 4782 0.79 0.199387
Target:  5'- cGCCAGCAAGCgccucggcgcGGUGgccgaCCGCAACGg -3'
miRNA:   3'- aCGGUCGUUCGa---------CCACaa---GGUGUUGC- -5'
19080 5' -53.2 NC_004684.1 + 11723 0.69 0.670255
Target:  5'- gGuCCAGC-AGCUGGUGcgCCGCcaGGCc -3'
miRNA:   3'- aC-GGUCGuUCGACCACaaGGUG--UUGc -5'
19080 5' -53.2 NC_004684.1 + 43873 0.75 0.360255
Target:  5'- gGUgAGCAGGCUGGUGacgCCggACAGCGu -3'
miRNA:   3'- aCGgUCGUUCGACCACaa-GG--UGUUGC- -5'
19080 5' -53.2 NC_004684.1 + 45346 0.71 0.548307
Target:  5'- gUGCCuGGC--GCUGGcUGUUCCGCAugucGCGg -3'
miRNA:   3'- -ACGG-UCGuuCGACC-ACAAGGUGU----UGC- -5'
19080 5' -53.2 NC_004684.1 + 16970 0.69 0.681329
Target:  5'- gGCCuGCAccugcuGCUGGUGUaCCcCAACa -3'
miRNA:   3'- aCGGuCGUu-----CGACCACAaGGuGUUGc -5'
19080 5' -53.2 NC_004684.1 + 39180 0.68 0.714214
Target:  5'- gGCCAgguagcGCAGGCUGGcgGUgcugUCCACGuGCGc -3'
miRNA:   3'- aCGGU------CGUUCGACCa-CA----AGGUGU-UGC- -5'
19080 5' -53.2 NC_004684.1 + 46383 0.74 0.396067
Target:  5'- gGUCAGCGAGCUaugGGUGcgCCGCAGg- -3'
miRNA:   3'- aCGGUCGUUCGA---CCACaaGGUGUUgc -5'
19080 5' -53.2 NC_004684.1 + 58966 0.71 0.52668
Target:  5'- gGcCCGGCGGGCgcgcGG-GUUCCACAcACGg -3'
miRNA:   3'- aC-GGUCGUUCGa---CCaCAAGGUGU-UGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.