miRNA display CGI


Results 1 - 20 of 48 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
19083 5' -56.2 NC_004684.1 + 63435 0.66 0.735832
Target:  5'- -uGACCUGGCCGGggucguCCGGuG-CGGAGAa -3'
miRNA:   3'- ucCUGGACCGGUU------GGCC-CaGUUUCUc -5'
19083 5' -56.2 NC_004684.1 + 9526 0.66 0.735832
Target:  5'- cGGuCCUGGCguGCCGGGacgcuggcaaUCGGGcGGGu -3'
miRNA:   3'- uCCuGGACCGguUGGCCC----------AGUUU-CUC- -5'
19083 5' -56.2 NC_004684.1 + 60773 0.66 0.735832
Target:  5'- cGGcCCUGGCCAgGCCGGuUCcgguGAGc -3'
miRNA:   3'- uCCuGGACCGGU-UGGCCcAGuuu-CUC- -5'
19083 5' -56.2 NC_004684.1 + 54076 0.66 0.72543
Target:  5'- cGGGugC-GGUgAcCCGGGUCAAggcgucGGAGg -3'
miRNA:   3'- -UCCugGaCCGgUuGGCCCAGUU------UCUC- -5'
19083 5' -56.2 NC_004684.1 + 31012 0.66 0.72543
Target:  5'- uGGGCCUGacGCCGACCGGugaGUUcuGGGa -3'
miRNA:   3'- uCCUGGAC--CGGUUGGCC---CAGuuUCUc -5'
19083 5' -56.2 NC_004684.1 + 14194 0.66 0.72543
Target:  5'- uGGAcgcauuCCUGGCCAGCggCGcGGUCGGccuguccccGGAGg -3'
miRNA:   3'- uCCU------GGACCGGUUG--GC-CCAGUU---------UCUC- -5'
19083 5' -56.2 NC_004684.1 + 56686 0.66 0.72543
Target:  5'- cGGugCUGGCgCAgaaGCUGGGcCcGGGGGu -3'
miRNA:   3'- uCCugGACCG-GU---UGGCCCaGuUUCUC- -5'
19083 5' -56.2 NC_004684.1 + 23211 0.66 0.714938
Target:  5'- gAGGugCUGGCgCGcGCCGGGUUc----- -3'
miRNA:   3'- -UCCugGACCG-GU-UGGCCCAGuuucuc -5'
19083 5' -56.2 NC_004684.1 + 18402 0.66 0.714938
Target:  5'- cGGGCCcGGCCAGCaGGG-CAccGAc -3'
miRNA:   3'- uCCUGGaCCGGUUGgCCCaGUuuCUc -5'
19083 5' -56.2 NC_004684.1 + 462 0.66 0.704367
Target:  5'- cGuGGCCgUGGaCAACCGGGcCAgcGAGg -3'
miRNA:   3'- uC-CUGG-ACCgGUUGGCCCaGUuuCUC- -5'
19083 5' -56.2 NC_004684.1 + 60742 0.66 0.693728
Target:  5'- cGGcGACCgggUGGCC-GCCGGGUgGGGGu- -3'
miRNA:   3'- -UC-CUGG---ACCGGuUGGCCCAgUUUCuc -5'
19083 5' -56.2 NC_004684.1 + 15590 0.66 0.683031
Target:  5'- -cGGCCUGGCCGuggACCGGGaCuaccuGGAc -3'
miRNA:   3'- ucCUGGACCGGU---UGGCCCaGuu---UCUc -5'
19083 5' -56.2 NC_004684.1 + 6831 0.66 0.683031
Target:  5'- gAGGAgCUGGCCua-CGGcG-CGAAGGGc -3'
miRNA:   3'- -UCCUgGACCGGuugGCC-CaGUUUCUC- -5'
19083 5' -56.2 NC_004684.1 + 1919 0.67 0.661506
Target:  5'- cGGACCcGGCCuGCCGGGcCu--GGu -3'
miRNA:   3'- uCCUGGaCCGGuUGGCCCaGuuuCUc -5'
19083 5' -56.2 NC_004684.1 + 409 0.67 0.661506
Target:  5'- gGGGAaauCCUGGUgcACUGGGUCGAcguGGAc -3'
miRNA:   3'- -UCCU---GGACCGguUGGCCCAGUU---UCUc -5'
19083 5' -56.2 NC_004684.1 + 10016 0.67 0.639875
Target:  5'- cGGACCUGccgcgcGCCGACCGGGa------- -3'
miRNA:   3'- uCCUGGAC------CGGUUGGCCCaguuucuc -5'
19083 5' -56.2 NC_004684.1 + 7756 0.67 0.639875
Target:  5'- gGGGACCUgaccgGGCCGacccccACCGuGGUCGAGc-- -3'
miRNA:   3'- -UCCUGGA-----CCGGU------UGGC-CCAGUUUcuc -5'
19083 5' -56.2 NC_004684.1 + 34190 0.67 0.638792
Target:  5'- cGGGCUguccgucgccaUGGCCAcggugacgaccuuGCCGaGGUCGAGGGc -3'
miRNA:   3'- uCCUGG-----------ACCGGU-------------UGGC-CCAGUUUCUc -5'
19083 5' -56.2 NC_004684.1 + 58175 0.67 0.629045
Target:  5'- cGGGuCCUGGCCcACCcGGUCAc---- -3'
miRNA:   3'- -UCCuGGACCGGuUGGcCCAGUuucuc -5'
19083 5' -56.2 NC_004684.1 + 21565 0.67 0.629045
Target:  5'- -uGACCgccgaGGCCGucACCGGGUCAAu--- -3'
miRNA:   3'- ucCUGGa----CCGGU--UGGCCCAGUUucuc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.