miRNA display CGI


Results 1 - 20 of 77 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
19095 5' -61.6 NC_004684.1 + 66518 0.67 0.340853
Target:  5'- gGGCCGCCUuCA-GCGCgGC-CCgGCg -3'
miRNA:   3'- aCUGGCGGAcGUaCGCGgCGaGGgUG- -5'
19095 5' -61.6 NC_004684.1 + 63081 0.66 0.390453
Target:  5'- aGugCGCCcG-GUGCaCCGCgUCCCACu -3'
miRNA:   3'- aCugGCGGaCgUACGcGGCG-AGGGUG- -5'
19095 5' -61.6 NC_004684.1 + 62951 0.66 0.399166
Target:  5'- cGGCCuCCaGC-UGCGCCaGCaggCCCGCg -3'
miRNA:   3'- aCUGGcGGaCGuACGCGG-CGa--GGGUG- -5'
19095 5' -61.6 NC_004684.1 + 61674 0.66 0.399166
Target:  5'- gUGugCGCCUGCAcgccauugGCGUCGgUgCCGu -3'
miRNA:   3'- -ACugGCGGACGUa-------CGCGGCgAgGGUg -5'
19095 5' -61.6 NC_004684.1 + 59544 0.71 0.188988
Target:  5'- cUGcACCGCCaGCGcGCGCCGUUgUCGCa -3'
miRNA:   3'- -AC-UGGCGGaCGUaCGCGGCGAgGGUG- -5'
19095 5' -61.6 NC_004684.1 + 58458 0.66 0.426036
Target:  5'- cGACUGCCcGCugagGCcagcgcgaacuuGCCGCgCCCGCc -3'
miRNA:   3'- aCUGGCGGaCGua--CG------------CGGCGaGGGUG- -5'
19095 5' -61.6 NC_004684.1 + 57943 0.75 0.097239
Target:  5'- cGACCGCCUGCG-GUGCuCGCUgCgGCu -3'
miRNA:   3'- aCUGGCGGACGUaCGCG-GCGAgGgUG- -5'
19095 5' -61.6 NC_004684.1 + 57779 0.66 0.408002
Target:  5'- ---gCGCCUGCAcgGCG-CGCUCCUcgaGCa -3'
miRNA:   3'- acugGCGGACGUa-CGCgGCGAGGG---UG- -5'
19095 5' -61.6 NC_004684.1 + 57554 0.72 0.165981
Target:  5'- cGACCGCCgaGC-UGCGCCGgUuggccgacaucgCCCGCa -3'
miRNA:   3'- aCUGGCGGa-CGuACGCGGCgA------------GGGUG- -5'
19095 5' -61.6 NC_004684.1 + 57510 0.68 0.295267
Target:  5'- cGGCgGCCUGCuccUGCGCgGCgucgggaUCCgGCg -3'
miRNA:   3'- aCUGgCGGACGu--ACGCGgCG-------AGGgUG- -5'
19095 5' -61.6 NC_004684.1 + 57121 0.66 0.43523
Target:  5'- cGACCGCUgGCAgcacugGCGCgGCUgguucgccUCCAUg -3'
miRNA:   3'- aCUGGCGGaCGUa-----CGCGgCGA--------GGGUG- -5'
19095 5' -61.6 NC_004684.1 + 57092 0.67 0.348795
Target:  5'- gUGGCCGCCcGCAUGCaCUGgaCCUggaGCg -3'
miRNA:   3'- -ACUGGCGGaCGUACGcGGCgaGGG---UG- -5'
19095 5' -61.6 NC_004684.1 + 57068 0.67 0.356868
Target:  5'- aUGGCgGCCUGCGuUGCGgCGCg--CACa -3'
miRNA:   3'- -ACUGgCGGACGU-ACGCgGCGaggGUG- -5'
19095 5' -61.6 NC_004684.1 + 56644 0.68 0.333043
Target:  5'- -cGuuGCCUGCucgcuUGCGCCGCUCg--- -3'
miRNA:   3'- acUggCGGACGu----ACGCGGCGAGggug -5'
19095 5' -61.6 NC_004684.1 + 55738 0.68 0.295975
Target:  5'- uUGGCCGCCgugcugGCGUG-GCCGaugCCgACg -3'
miRNA:   3'- -ACUGGCGGa-----CGUACgCGGCga-GGgUG- -5'
19095 5' -61.6 NC_004684.1 + 55421 0.67 0.365071
Target:  5'- -uGCCGCCggucgcgGUGUGCGCCGCaggUgCCAg -3'
miRNA:   3'- acUGGCGGa------CGUACGCGGCG---AgGGUg -5'
19095 5' -61.6 NC_004684.1 + 53591 0.67 0.348795
Target:  5'- aGGCgGUCgGacaGUGCGCCGCUCUugagCACg -3'
miRNA:   3'- aCUGgCGGaCg--UACGCGGCGAGG----GUG- -5'
19095 5' -61.6 NC_004684.1 + 51124 0.68 0.300965
Target:  5'- aUGGCCGCgaGCAucugccgacgaaucUGCGCCGCcgacUCCUc- -3'
miRNA:   3'- -ACUGGCGgaCGU--------------ACGCGGCG----AGGGug -5'
19095 5' -61.6 NC_004684.1 + 51036 0.72 0.165981
Target:  5'- cGGCCGCCaGCuUGUcggccagcgccaGCCGCUCCuCGCu -3'
miRNA:   3'- aCUGGCGGaCGuACG------------CGGCGAGG-GUG- -5'
19095 5' -61.6 NC_004684.1 + 48476 0.72 0.170371
Target:  5'- gGGCCugGUCUG-AUGCGCCGCgacCCCGCc -3'
miRNA:   3'- aCUGG--CGGACgUACGCGGCGa--GGGUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.